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Restore stripping buffer

Manufactured by Thermo Fisher Scientific
Sourced in United States

Restore stripping buffer is a laboratory reagent used to remove previously bound antibodies or proteins from Western blot membranes. It is designed to gently and effectively strip the membrane, allowing for re-probing with different primary antibodies.

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47 protocols using restore stripping buffer

1

Immunoblotting Protocol for Protein Analysis

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Immunoblotting was conducted as previously described [25 (link), 75 (link)]. Specifically, samples with equal amounts of protein (~10 μg) were dissolved in Laemmli buffer containing 5% β-mercaptoethanol (Bio Rad, #1610737) and subjected to sodium dodecyl sulfate-polyacrilamide gel electrophoresis (8–16% gradient), using pre-cast gels (BioRad, #1610710; Hercules, CA), followed by protein transfer onto polyvinylidene difluoride membranes (BioRad, #1704159). The membranes were incubated in 5% blocking buffer (BioRad, #1706404) dissolved in TBST (100 mM Tris-HCl, pH 7.4, 150 mM NaCl, and 0.05% Tween 20) for 1 h at room temperature, followed by an overnight incubation at 4°C with primary antibodies dissolved in blocking buffer. Membranes were then washed with TBST and incubated with appropriate HRP-conjugated secondary antibodies for 1 h at room temperature. Chemiluminescent technique using the Clarity Western Substrate kit (BioRad, #1705061) was employed to visualize protein bands in a ChemiDoc XRS + imaging system (BioRad). Membranes were subsequently stripped with Restore Stripping Buffer (ThermoFisher Scientific, #46430; Rockford, IL) and re-probed with anti-α-tubulin or anti-actin antibodies to serve as the loading control. Densitometric analysis of protein bands was performed with the ImageJ software (National Institutes of Health).
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2

Western Blot Analysis of RUNX1 Protein

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20 μg of protein extracts in Laemmli buffer were run on a 4–20% gradient pre-cast gel (Bio-Rad) and transferred to nitrocellulose using Turbo transfer packs (Bio-Rad). Membranes were blocked using 5% milk in TBS-T, then RUNX1 (C-terminal: ab23980, 1:3,000; Abcam or N-terminal: sc-8563 N-20, 1:250; Santa Cruz Biotechnology) or anti-HA (H6908, 1:1,000; Sigma-Aldrich) was applied overnight at 4°C in 5% milk in TBS-T. After washing in TBS-T, this was followed with HRP-conjugated anti-rabbit or anti-goat antibody (Cell Signalling Technologies), and enhanced chemiluminescent reagent (Amersham) was applied and the blot was visualised using a GelDoc system (Bio-Rad). For loading controls, the membranes were stripped using Restore Stripping Buffer (Thermo Fisher Scientific) and GAPDH (ab8245; Abcam) was applied and visualised as above.
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3

Western Blotting with Modifications

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Western blotting was performed as described previously30 (link), 31 (link) with modifications. Briefly, cell layers were rinsed twice in PBS and lysed in ice-cold RIPA buffer (25mM Tris-HCl pH 7.6, 150mM NaCl, 1% NP-40, 1% sodium deoxycholate, 0.1% SDS) containing protease inhibitor cocktail (Sigma cat# P8340) and 3mM EDTA, with all steps performed on ice. 20 or 40µg of total protein per sample was separated on 8% SDS-PAGE gels and electroblotted overnight at 18V constant voltage onto PVDF membrane in transfer buffer (25mM Tris, 192mM glycine, 20% methanol, 0.01% SDS, pH 8.3). Membranes were blocked in TBS + 5% BSA/1% milk and incubated overnight at 4oC with primary antibodies followed by washing and incubation with peroxidase conjugated secondary antibodies. Immunoreactive bands were visualized using the SuperSignal West Dura or Femto Chemiluminescence kits (ThermoFisher Scientific) and imaged on a Fujifilm LAS 4000 gel documentation system using the Multi-gauge software (Fujifilm, Tokyo, Japan). Blots were stripped using Restore stripping buffer (Thermo Fisher Scientific) and re-probed with other primary antibodies of interest then lastly probed with HRP-anti-β-actin to confirm equal protein loading. Densitometry was performed using the Multi-gauge software.
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4

Comprehensive Western Blotting Protocol

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Western blotting was performed as described previously (Johnson et al. 2018 (link)). When reprobing blots, HRP-conjugated secondary antibodies were either inactivated by incubation with sodium azide in 5% skim milk/TBST or stripped with Restore Stripping Buffer (ThermoFisher). The following antibodies were used in this study: anti-RACK1 (Cell Signaling, ref. 4716S, 1:1000), anti-RACK1 (Santa Cruz, ref. 17754, 1:500), RPL5 (Genetex, ref. 101821, 1:1000), uS10/RPS20 (abcam, ref. 133776, 1:1000), eS10/RPS10 (Genetex, ref. 101836, 1:1000), uS5/RPS2 (Santa Cruz, ref. 130399, 1:500), and uS3/RPS3 (Bethyl, ref. 303-840A, 1:1000).
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5

Progesterone Modulation of LPS-Induced Inflammation

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Reagents and suppliers were: LPS (L6143), progesterone (P8783), mifepristone (M8046) (Sigma, St. Louis, MO); High Glucose Dulbecco’s Modified Eagle Medium (DMEM) (11995), phenol red free DMEM (31053), L-glutamine, sodium pyruvate, Pen/Strep and fetal bovine serum (Gibco, Grand Island, NY); NE-PER nuclear and cytoplasmic extraction reagents (78833), BCA protein assay kit (23227), restore stripping buffer (21059) and supersignal west dura extended duration substrate (34076) (Thermo Scientific, Rockford, IL); mouse TNF-α DuoSet enzyme-linked immunosorbent assay (ELISA) kit (DY410, R&D Systems, Minneapolis, MN); Antibodies against NF-κB p65 (4764), phospho-NF-κB (3033), IκB-α (9242), phospho-IκBα (9246), p38 (9212) and phospho-p38 (9211) MAPK, p44/42 (9102) and phspho-p44/42 (9101) MAPK, JNK (9252), phosphor-JNK (9251), GAPDH (2118) (Cell signaling, Beverly, MA); COX-2 antibody (160106) (Cayman chemical, Ann Arbor, MI); antibodies against progesterone receptor (sc-7208), NOS2 (sc-650) and secondary HRP antibodies (Santa Cruz Biotechnology, Santa Cruz, CA).
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6

Western Blot Analysis of Liver Proteins

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An equal amount of protein (30 μg) from liver microsomes, nuclei, or cytosol was loaded into lanes in an SDS buffer and subjected to electrophoresis on 10 or 15% polyacrylamide gels (Bio-Rad) as previously described (Belcher et al., 2005 (link), 2013 (link), 2014 (link)). The samples were transferred to polyvinylidene fluoride membranes (Millipore) via electrophoresis. The membranes were probed with rabbit primary antibodies against human FHC (Origene, #TA301280), mouse HO-1 (Stressgen, #OSA111), mouse NF-κB p65 (Cell Signaling #3034) mouse NF-κB phospho-p65 (Cell Signaling, #3031), mouse 5-aminolevulinic acid synthase (ALAS; GeneTex, #GTX104139), mouse ferroportin (Novus Biologicals, #NBP1-21502), mouse ferritin light chain (FLC; Origene, #TA307874), mouse VCAM-1 (Abcam, #174279), and mouse GAPDH (Sigma, #G9495). Sites of binding were visualized via the appropriate secondary IgG conjugated to horseradish peroxidase (Santa Cruz). Final detection of bands was done with ECF TM substrate (GE Healthcare) and read on a Storm TM Reader (GE Healthcare). Membranes were stripped using Restore Stripping Buffer (Thermo Scientific) and re-probed as described above.
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7

Western Blotting of Brain Proteins

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Protein was extracted from pulverized brain powder, prepared as described above, and quantified using the BCA protein assay kit (Thermo Scientific, Rockford, IL), according to manufacturer's instructions. 30μg protein samples from each lysate were run on a denaturing 4-20% SDS-PAGE gel. The gel was transferred onto a nitrocellulose membrane using the iBlot dry transfer system (Invitrogen, Carlsbad, CA), and Western blots were performed for CD86 (mouse anti-human CD86, 1:3000, BD Biosciences, San Jose, CA) or CD64 / FcgR1 (mouse anti-human CD64, 1:1000, BD Biosciences, San Jose, CA) as described previously (Wilcock, et al., 2008 (link)). The blots were stripped using Restore stripping buffer (Thermo Scientific, Rockford, IL) and re-probed using the above protocol for β-actin (Rabbit anti-β-actin, 1:10, 000, Cell Signaling Technology, Danvers, MA). The blots were imaged on the Odyssey imager and semi-quantitative densitometry analysis was performed using the Odyssey Imaging Software (Licor, Lincoln, NE).
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8

Examining Protein Expression with AZD6738 and Cisplatin

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Cells were treated with the indicated doses of AZD6738, cisplatin, combination, or mock for 24 h. Protein lysates were generated by scraping adherent cells in lysis buffer (150 mM NaCl, 50 mM Tris-HCL, 5 mM NaF, 1% Tween 20, 0.5% IGEPAL CA-630, protease inhibitor cocktail, pH 7.5) and incubating on ice for 30 min. For AZD6738 + cisplatin experiments, detached cells were pelleted from the media and combined with the adherent cell lysate. SDS-PAGE using 4–12% Bis-Tris gels (NuPAGE Novex) and Western blotting were performed using standard techniques. Antibody details are provided in the supplementary methods. Following detection of phospho-proteins, membranes were stripped for 25 min at room temperature in Restore stripping buffer (Thermo Scientific) and re-probed for corresponding total protein. Images of blots were acquired at 24-bit depth using a Canon LiDE110 scanner and were processed (converted to 8-bit, cropped) using ImageJ.
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9

FRET-based Analysis of PTP1B Phosphorylation

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All chemicals and reagents were purchased from Sigma-Aldrich unless otherwise specified. Global tyrosyl phosphorylation was detected by anti-phosphotyrosine antibody 4G10 (#05-321, Millipore). Anti-p62DOK, anti–phospho-Erk and total ERK antibodies were obtained Cell Signaling Technology. For loading controls for corresponding phosphotyrosine proteins, the membrane was stripped by Restore Stripping Buffer (#21059, Thermo Scientific) and reprobed with antibodies against the individual protein. For the FRET reporter, ECFP and EYFP cDNA was PCR-amplified and cloned on either side of PTP1B in pET28b vector. A spacer containing residues GSGSG was employed between the protein and the fluorophores on each side to provide a flexible connection and also to allow rotational mobility as the individual domains of the protein will be folded separately. CFP-PTP1B-YFP was expressed under IPTG induction in BL21 cells (E. coli) and purified with Ni-NTA matrix exploiting the C-terminal His tag.
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10

Western Blot Analysis of Signaling Proteins

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Control and treated cells were collected and lysated as previously described and the protein amount were evaluated [43 (link), 44 (link)]. 30 μg of proteins were loaded and separated on precast 4–20% gradient Bis-Tris gel in running buffer at 100 mV for 70 min followed by transfer to PVDF membranes using a semi-dry device (Thermo scientific, UK), then blocked in 5% no-fat milk for 30 minutes. Membranes were incubated with the subsequent primary antibodies overnight: anti-p-AKT (1:1000), anti-PI3K (1:1000 Cell Signaling, USA), anti p-CREB (1:500 Cell Signaling, USA), anti-pTrkB (1:2000 Cell Signaling, USA), anti-mBDNF (1:500 Abcam, UK), anti-pJNK (1:1000 Santa Cruz, USA), anti-p75(1:1000 Abcam, UK), anti-pro-BDNF(1:1000 Millipore, USA), anti-pERK5 (1:1000 Cell Signaling, USA), anti p-ERK1,2 (1:1000 Santa Cruz, USA). After different washes, membranes were incubated with 1:10000 horseradish peroxidase-conjugated anti-rabbit IgG or anti-mouse IgG. The protein bands were detected, normalized and analyzed to actin (housekeeping). Anti-β-actin (HRP-conjugate) (1:10000) has been used. To reprobe, membranes have been stripped with Restore stripping buffer (Thermo Scientific, UK) following manufacturer’s instructions.
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