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9 protocols using mitogreen

1

Visualizing Mitochondrial Dynamics in Cardiomyocytes

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Three-hundred-thousand iCMs were seeded on a 29 mm glass-bottom (10 mm) dish (Cellvis, #D29-10-1.5-N, Sunnyvale, CA, USA). The following day, live cells were incubated with 0.5 µg/ml Mitogreen (#M7514, Thermo Fisher Scientific, Waltham, MA, USA) for mitochondria in medium at 37°C for 30 min. For NBT cells, 50,000 cells were seeded in an eight-chamber slide (#80826, Ibidi GmbH, Gräfelfing, Germany). The following day, live cells were incubated with 0.5 µg/ml Mitogreen (#M7514, Thermo Fisher Scientific) for mitochondria in medium at 37°C for 30 min together with Hoechst (#33342, Thermo Fisher Scientific) at 1 µg/ml final concentration. Images were taken by confocal microscopy (Zeiss LSM710, software Zen2.1) using excitation of 490 nm and emission of 516 nm for Mitogreen and excitation of 405 nm for Hoechst.
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2

Assessing Mitochondrial Membrane Potential

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To assess MMP, cells were co‐stained with tetramethylrhodamine methyl ester (TMRM, 100 nM, Life Technologies) and Mitotracker Green (Mitogreen, 100 nM, Life Technologies) for 30 min, as in our previous study.11 Images were captured under a fluorescence microscope (Leica DMIL). Excitation wavelengths were 543 nm for TMRM and 488 nm for Mitogreen. Post‐acquisition processing was performed with Image J software for the quantification of fluorescent intensity.
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3

NRF2 Modulation and Redox Regulation

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Pba was from Santa Cruz Biotechnology (Santa Cruz, CA, USA). NRF2 antibody was obtained from Abcam (Cambridge, MA, USA). Antibodies recognizing AKR1C1 and BCRP were purchased from Abnova (Taipei City, Taiwan) and Cell Signaling Technology (Beverly, MA, USA), respectively. PRDX3 and β-tubulin antibodies were obtained from Santa Cruz Biotechnology. Ko143, 3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide (MTT), and puromycin were obtained from Sigma-Aldrich (Saint Louis, MO, USA). 5(6)-Carboxy-2′,7′-dichlorofluorescein diacetate (DCFDA), trans-1-(2′methoxyvinyl) pyrene, and MitoGreen were purchased from Life Technologies (Carlsbad, CA, USA). The lentiviral system containing a pre-designed human NRF2 shRNA and nonspecific scrambled RNA (scRNA) was bought from Sigma-Aldrich.
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4

Evaluating Mitochondrial Oxidative Stress in MC3T3-E1 Cells

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After 48 h of intervention, the changes in ROS levels of MC3TE-E1 cells following the intervention were evaluated using 2′,7′-dichlorofluorescein diacetate (DCFH-DA; Sigma, St. Louis, MO) staining and MitoSOX™ Red mitochondrial superoxide indicator (MitoSOX™; Sigma, St. Louis, MO) staining.
To confirm the changes in mitochondrial membrane potential, we use co-stained with tetramethylrhodamine methyl ester (TMRM, 100 nM, Life Technologies) and Mitotracker Green (Mitogreen, 100 nM, Life Technologies) to observe and evaluate the state of the mitochondrial oxidative stress in treated cells. After 48 h of intervention, TMRM and Mitogreen staining were performed as previously described [30 (link)]. The results of TMRM (excitation wavelengths = 543 nm) and Mitogreen (excitation wavelengths = 488 nm) were captured using Laser confocal microscope. The quantification of mitochondrial membrane potential was determined using Image J software.
Immunofluorescence staining was used to quantitatively detect and evaluate the expression of SIRT1 and SOD2 in MC3T3-E1 after different interventions to understand the changes of cellular oxidative stress as stated above. The levels of Malondialdehyde (MDA) and total SOD activity in the cells were measured by a malondialdehyde Detection Assay kit (APPLYGEN) and Superoxide Dismutase Activity Assay Kit (Abcam), respectively.
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5

Mitochondrial Dysfunction and Apoptosis Assays

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Dulbecco’s Modified Eagle Medium (DMEM) (#11995065), Fetal bovine serum (FBS) (#16000-044), MitoSOX Red (#M36008), Mitogreen (#M7514), and TMRM (#T668) were purchased from Life Technologies (Grand Island, NY, USA). TUNEL assay kit was from Roche (Mannheim, Germany). Annexin V-fluorescein isothiocyanate (FITC) apoptosis detection kit was obtained from BD Bioscience (NJ, USA). Fluo-4-AM, ATP assay kit were obtained from Beyotime Institute of Biotechnology (Shanghai, China). Glucose oxidase (GO) (#G2133), N-acetylcysteine (NAC) (#A7250), Cyclosporine A (CsA) (#SML1018) and Lithium chloride (LiCl) (#L9650) were obtained from Sigma-Aldrich (St. Louis, MO, USA). LY294002 (#9901) was from Cell Signaling Technology (Beverly, MA, USA). Antibodies against phosphorylated Akt (Ser473) (p-Akt) (#4060 S), Akt (#2920 S), phosphorylated GSK3β (Ser9) (p-GSK3β) (#9336 S), GSK3β (#9832 S), Bax (#2772 S), Bcl2 (#3498 S), Caspase-3 (#9662 S), and β-actin (#3700) were obtained from Cell Signaling Technology (Beverly, MA, USA), and antibody CypD (ab110324) was obtained from Abcam (USA). Chamber slides, goat anti-rabbit (#656120) and anti-mouse (#626520) secondary antibodies, and DAPI (#P36931) were obtained from Invitrogen (Carlsbad, CA, USA)
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6

Evaluating Mitochondrial Membrane Potential and ROS in HIV-specific T Cells

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MM and total ROS content of cells were evaluated by staining with 12.5nM MitoTracker Green (MitoGREEN) and 1.25μM CellROX Deep Red (CellROX; both from Thermo Fisher), respectively, according to the manufacturer’s instructions (staining panel 1; see Figure 1 for gating strategy). In order to evaluate MMP, PBMCs were first stained with their corresponding HIV peptide-MHC Class I tetramer and then stimulated for five hours at 37°C with 5% CO2 with 1μg/mL HIV peptide pools comprised of peptides derived from the Gag, Nef, or Pol HIV proteins (depending on and including the relevant tetramer peptide; NIH AIDS Reagent Program) or R10 media as an unstimulated control. A previous study that utilized JC-1 staining to assess the MMP of CD8+ T cells stimulated these cells with anti-CD3 antibody.24 (link) For more physiologic conditions, we stimulated with HIV peptide pools. MMP was evaluated via staining with 0.25μg/mL JC-1 according to the manufacturer’s instructions (Thermo Fisher; staining panel 2). Cells treated with 50μM carbonyl cyanide 3-chlorophenylhydrazone (CCCP; R&D Systems, Minneapolis, MN) to induce mitochondrial membrane depolarization were included for JC-1 stain gating purposes.
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7

Evaluating Mitochondrial Dynamics in MEFs

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To test mitochondrial load and membrane potential, mouse embryonic fibroblasts (MEF) were generated from all MNX and wild-type strains. MEF lines ( < passage 3) were harvested and stained individually and in combination with MitoTracker Red CMXRos (Molecular Probes by Invitrogen: M7512) and MitoTracker Green FM (Molecular Probes by Invitrogen: M7514) fluorescent probes followed by analysis by flow cytometry as described previously (20 (link)). Briefly, 100,000 cells from each line were added to cytometer tubes, and then stained with 200 nM of each probe alone or in combination. Cells from each line were also left as unstained controls. Cells were protected from light and the dye incubated for 15 minutes at 37o before placing on ice. Flow cytometry was performed with parameters from Molecular Probes website (MitoRed: Excitation-579 nm and Emission-599 nm, MitoGreen: Excitation-490 nm and Emission-516 nm). Fluorescence intensity at the appropriate emission wavelengths was captured.
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8

Intracellular Localization of Labeled Linoleic Acid

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To assess the intracellular localization of LA, it was labeled with the fluorescent reagent 9-anthryldiazomethane (ADAM; Funakoshi, Tokyo, Japan). ADAM reacts with fatty acids to form esters that emit fluorescence with strong intensity. Methanol (1 mL) was added to ADAM (1 mg) to prepare a 0.1% ADAM reaction solution. The reaction solution (100 μL) and LA (100 μL) were mixed in the dark at room temperature for 2 h. CT26 cells were then treated with labeled LA (35 μg/mL) and Mitogreen (100 nM)(Molecular Probes, Eugene, OR, USA) for visualizing mitochondria. Images were observed using a fluorescence microscope (BZ-X700, KEYENCE, Osaka, Japan). Fluorescence intensities of the labeled-LA solution (35 μg/mL) and the whole cell lysate and nuclear fraction of labeled LA-treated CT26 cells were measured by a fluorescence spectrophotometer (F-2700, Hitachi High-Tech GLOBAL, Tokyo, Japan).
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9

Reagents and Cell Lines for Diabetes Research

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DHE, DAPI, CellROX, MitoGreen, MitoRed, MitoSOX, Hochest 33342, and chloromethyl‐2',7'‐dichlorodihydrofluorescein diacetate (CM‐H2DCFDA) were purchased from Molecular Probes (Eugene, OR). Glucose, BSA, trypsin, palmitate, NADPH, and histopaque‐1077 were purchased from Sigma (St. Louis, MO). Lucigenin, and collagenase P were from Roche (Switzerland). GHTT was purified as described previously (Almeida et al, 2011 (link); Kuo et al, 2017 (link)). Recombinant proteins, 6×His‐Pdia4, Gst‐p22phox and Gst‐Ndufs3 were purchased from Enzo (Farmingdale, NY). Gst‐TecSH3, containing a SH3 domain of Tec, was produced as published (Kuo et al, 2017 (link)). The antibodies used in this study were purchased (Appendix Table S3). 293T cells (CRL‐3216), Min6 cells (Yagi et al, 1995 (link)), and pancreatic islets were grown in complete DMEM medium (Thermo Fisher, Waltham, MA) containing 10% and 20% fetal bovine serum (FBS), respectively, and 3.3 mM glucose unless indicated otherwise. Human islets were purchased from Lonza (Switzerland) and handled according to the protocol of the Academia Sinica Institutional Review Board (AS‐IRB01‐14015). Informed consent was obtained from all human subjects and the experiments conformed to the principles of the WMA Declaration of Helsinki and the Department of Health and Human Services Belmont Report.
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