The largest database of trusted experimental protocols

4 protocols using clone gk1

1

Characterizing HER3-specific T cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
Tumors were collected (n = 3–5/group) from control and HER3-DC1–treated TUBO tumor–bearing mice. Tumor-infiltrating lymphocytes (TIL) were isolated following the protocol described above and cocultured with mature DC1 cells pulsed with individual HER3 peptides (10:1 TIL:DC; i.e., 106 TIL:105 DC in 1 mL total volume). Intracellular staining was performed using the BD Cytofix/Cytoperm Plus Fixation/Permeabilization Kit with BD GolgiPlug Protein transport inhibitor containing Brefeldin A (cat. #555028, BD Biosciences). Briefly, 6 hours after TIL:DC coculture, GolgiPlug was added to inhibit intracellular protein transport (1 μL/106 cells) for 12 hours. Cells were harvested the next day, and surface staining with CD45-BUV395 (cat. #564279, Clone 30-F11, BD Biosciences), CD4-BUV805 (cat. #612900, Clone GK1.5, BD Biosciences), and CD8-Pacific Blue (cat. #558106, Clone 53–6.7, BD Biosciences) was performed as described above. Cells were fixed and permeabilized following the manufacturer’s protocol and were stained for intracellular IFN-γ-PE (cat. #554412, Clone XMG1.2, BD Biosciences). Acquisition was performed using an LSRII (BD Biosciences) cytometer, and FACS data analysis was performed with FlowJo software (FlowJo).
+ Open protocol
+ Expand
2

Characterizing Tumor-Infiltrating T Cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
Tumors were collected (n = 3–5/group) from control and HER3-DC1–treated TUBO tumor–bearing mice. Tumor-infiltrating lymphocytes (TIL) were isolated following the protocol described above and cocultured with mature DC1 cells pulsed with individual HER3 peptides (10:1 TIL:DC; i.e., 106 TIL:105 DC in 1 mL total volume). Intracellular staining was performed using the BD Cytofix/Cytoperm Plus Fixation/Permeabilization Kit with BD GolgiPlug Protein transport inhibitor containing Brefeldin A (cat. #555028, BD Biosciences). Briefly, 6 hours after TIL:DC coculture, GolgiPlug was added to inhibit intracellular protein transport (1 μL/106 cells) for 12 hours. Cells were harvested the next day, and surface staining with CD45-BUV395 (cat. #564279, Clone 30-F11, BD Biosciences), CD4-BUV805 (cat. #612900, Clone GK1.5, BD Biosciences), and CD8-Pacific Blue (cat. #558106, Clone 53–6.7, BD Biosciences) was performed as described above. Cells were fixed and permeabilized following the manufacturer's protocol and were stained for intracellular IFN-γ-PE (cat. #554412, Clone XMG1.2, BD Biosciences). Acquisition was performed using an LSRII (BD Biosciences) cytometer, and FACS data analysis was performed with FlowJo software (FlowJo).
+ Open protocol
+ Expand
3

Detailed FACS Analysis of T and B Cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
For FACS analysis, single-cell suspensions were stained with the following antibodies: anti-CD4 (BioLegend, clone GK1.5, #100402, 1:400), anti-CD4 (BD Biosciences, clone RM4-5, #560468, 1:500), anti-CD19 (Thermo Fisher Scientific, clone eBio1D3, #45-0193-82, 1:400), and anti-CD8 (BD Biosciences, clone 53-6.7, #560776, 1:500). For intracellular staining, T cells were restimulated with 50 ng/ml PMA and 750 ng/ml ionomycin in the presence of 10 μg/ml brefeldin A (all from Sigma-Aldrich) for 4 h. After fixation and permeabilization, the cells were stained with anti-IL-17A (Thermo Fisher Scientific, clone eBio17B7, #17-7177-81, 1:200) and anti-IFN-γ (Thermo Fisher Scientific, clone XMG1.2, #17-7311-82, 1:500). For detection of apoptotic cells, the cultured Bregs were harvested, washed with HBSS buffer and resuspended in a HBSS solution containing FITC-labeled Annexin V (Thermo Fisher Scientific, #88-8005-72, 1:100). To measure the cell proliferation, the staining with dye carboxyfluorescein succinimidyl ester (5 µM CFSE, Sigma-Aldrich) was performed. The cells were analyzed using FACSCalibur cytometer or BD FACSAria III cell sorter (both BD Biosciences). Data were analyzed with FlowJo analysis software (TreeStar). All FACS sequential gating/sorting strategies for the analysis of T and B cells are provided in Supplementary Fig. 7.
+ Open protocol
+ Expand
4

Quantifying Regulatory T Cells by Flow Cytometry

Check if the same lab product or an alternative is used in the 5 most similar protocols
Flow cytometry was used to verify the cell activity and purity after magnetic beads separation. The separated cells were resuspended with DMSO solution and divided into isotype pair tube, CD4+CD25+ tube and sample tube. Added 1 μL FVS510 (BD biosciences, 564406) in three tubes. Added 2 μL PE-labelled CD4 Isotype (BD biosciences, clone A95-1, rat. # 553989) and 5 μL APC-labelled CD25 isotype (BD biosciences, clone A110-1, rat. # 550884) in isotype pair tube. Added 2 μL PE-labelled CD4 (BD biosciences, clone GK1.5, rat. # 561829) and 5 μL APC-labelled CD25 (BD biosciences, clone PC61, rat. # 561048) in CD4+CD25+ tube and sample tube. 1 mL of freshly prepared 1× TF Fix/Perm working buffer was added to each tube, which was mixed and incubated at 2–8 °C in dark for 30 min. Added 1 mL 1× Perm/Wash working buffer into each tube. Added 2 μL BV421-labeled Foxp3 antibody (BD biosciences, clone MF23, rat. # 562996) and 2 μL BV421-labeled Foxp3 isotype antibody (BD biosciences, clone R35-38, rat. # 562603) in sample tube and isotype pair tube, respectively. The solution was stained for 30 min avoiding light, and then was centrifugated for 5 min. Added 0.5 mL PBS into each tube for mixing.
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!