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8 protocols using 2 3 5 triphenyltetrazolium

1

Isolation and Characterization of Photorhabdus Symbionts

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Two types of the bacterial symbiont, Photorhabdus, were isolated from the two entomopathogenic nematodes, Heterorhabditis indica (HRM1), isolated from Alexandria, Northern Egypt, and Heterorhabditis sp. (HS1), isolated from Ras-Sidr in South Sinai of Eastern Egypt, as detailed in (El-Sadawy et al. 2016 ). Briefly, bacteria were isolated from their symbiotic nematodes according to Woodring and Kaya (1988) . For each subculture, the phase status was determined by culturing on NBTA agar [2.3% nutrient agar (Difco), 0.0025% bromothymol blue (Merck), 0.004% 2,3,5-triphenyltetrazolium (Merck)]. Phase I colonies are blue on NBTA while phase II colonies are red. Twenty infective nematode juveniles were surface sterilized for 10min in 1.0% sodium hypochlorite, washed in sterile distilled water, transferred to a Petri dish containing 5ml of TSBYE [3% tryptic Soy broth (Difco), 0.5% yeast extract (Difco)], and grinded using grinder pistol. The plates were incubated at 30 °C for 24h and streaked on NBTA plates [2.3% nutrient agar (Difco), 0.0025% bromothymol blue (Merck), 0.004% 2,3,5-triphenyltetrazolium (Merck)]. The presence of Photorhabdus colonies was confirmed by dye adsorption on NBTA plates, production of luminescence, and antibiotic activity. The isolated bacteria were then maintained on NBTA plates at 10 °C and subcultured weekly.
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2

Measuring Myocardial Infarct Size via Staining

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To measure the MI size, Evans blue/2,3,5‐triphenyltetrazolium staining was conducted at 1 week post‐AMI to detect the contributions of increased native collateral blood flow on MI size. Briefly, 1 week after LAD arterial ligation, 1 mL 3% Evans blue dye (Sigma‐Aldrich) was injected into the ascending aorta. Then, hearts were removed for MI size analyses by 2,3,5‐triphenyltetrazolium staining. The left ventricle was isolated and cut into 2‐mm‐thick sections perpendicular to the axis of the LAD. Then, slices were immediately immersed in 1% 2,3,5‐triphenyltetrazolium (Sigma‐Aldrich) in phosphate buffer (pH 7.4) at 37°C for 10 minutes to discriminate infarcted tissue from viable myocardium. All sections were scanned from both sides using a color charge‐coupled device camera (FV‐10; Fujifilm Holdings Corporation, Tokyo, Japan).
The rats were randomly divided into 4 groups as follows: (1) Sham group, surgical procedure without arterial ligation; (2) Control group, arterial ligation for 1 week; (3) Vector‐LV group, Vector‐LV injection+arterial ligation for 1 week; and (4) PEDF‐LV group, PEDF‐LV injection+arterial ligation for 1 week.
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3

Neuroprotective Effects of Curcumin and Mithramycin

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Adult male Sprague-Dawley rats weighing 250–300 g were purchased from Chongqing Medical University. Rats were kept under controlled conditions (25 ± 1°C, 60–65% humidity, and 12/12 h light/dark cycle) for the duration of the study. Water and food were available ad libitum. All experiments were carried out in accordance with the National Institute of Health guideline requirements in China.
Cur, Mithramycin (MTM), and 2,3,5-triphenyltetrazolium chloride (TTC) were purchased from Sigma (St. Louis, USA). Cur (300 mg/kg) was dissolved in normal saline with 1% dimethylsulfoxide (DMSO) and injected intraperitoneal (IP) 1 hour after middle cerebral artery occlusion following established protocols [16 (link)]. MTM (250 μg/kg) was administered at the start of reperfusion [17 (link)]. Small interfering RNA (siRNA) targeted to Prdx6 (Prdx6-siRNA) and a scrambled RNA (scrRNA) controls were purchased from GenePharma Co., Ltd. (Shanghai, China). The sequence and antisequence were 5′-CUUCCACGAUUUCCUAGGATT-3′ and 5′-UCCUAGGAAAUCGUGGAAGTT-3′, respectively. 24 hours before middle cerebral artery occlusion (MCAO) surgery, 5 μl of either Prdx6-siRNA or scrRNA was applied by intracerebroventricular injection at a rate of 0.2 μl/min. The stereotactic coordinates were 1.5 mm lateral and 1.1 mm posterior to the bregma and 4.5 mm below the surface of the skull.
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4

Isoquercetin Bioanalytical Techniques

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Isoquercetin (≥ 98%, HPLC) was bought from Shanghai PureOne Biotechnology (Shanghai, China). The 1,3-[4,5-dimethyl-2-thiazolyl]-2,5-diphenyl-2-tetrazolium bromide (MTT) and 2,3,5-triphenyltetrazolium chloride (TTC) were purchased from Sigma-Aldrich (Saint Louis, MO, United States). In situ cell death detection kit, TMR red (Roche, Mannheim, Germany), was used for terminal deoxynucleotidyl transferase (TdT)-mediated dUTP-biotin nick end labeling (TUNEL) assay. Protein kinase A (PKA) kinase activity assay kit (ab139435) was purchased from Abcam Ltd. Tumor necrosis factor-α (TNF-α), interleukin-1β (IL-1β), and IL-6 enzyme-linked immunosorbent assay (ELISA) kits were purchased from Proteintech Group, Inc. (CA, United States). Cyclic adenosine monophosphate (cAMP) ELISA kit was bought from Elabscience Biotechnology Co., Ltd. C5aR1 RNAscope® Fluorescent Multiplex Kit was purchased from Advanced Cell Diagnostics, Inc. (Hayward, CA, United States). All standard culture reagents were obtained from Gibco (Grand Island, NY, United States). For Western blotting, immunohistochemistry (IHC), and immunofluorescence analyses, the antibodies used are listed in Supplementary Table S1. Other chemical reagents were commercially available with analytical grade.
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5

Neuroprotective Compound Screening Protocol

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S1P [D-erythro-sphingosine-1-phosphate] was purchased from Avanti Polar Lipid (Alabaster, AL). FTY720 [2-amino-2-[2-(octyl-phenyl) ethyl]-1,3-propanediol hydrochloride] was kindly provided by Novartis AG (Basel). 2,3,5-Triphenyltetrazolium (TTC), 3,3′-diaminobenzidine tetrahydrochloride (DAB), fatty-acid-free BSA (FAF-BSA), mouse monoclonal anti-glial fibrillary acidic protein (GFAP) antibody, anti-β-actin antibody, cresyl violet acetate, and protease inhibitor cocktail were purchased from Sigma-Aldrich (St. Louis, MO). Silicon (Variotime) and Zoletil 50 were obtained from Heraeus Kulzer GmbH (Germany) and Virbac (Carros, France), respectively. Goat polyclonal anti-Iba1 and rabbit polyclonal anti-TNF-α antibodies were purchased from Abcam (Cambridge, UK). Avidin-biotin-peroxidase complex (ABC) kit and Vectashield were purchased from Vector Laboratories, Inc. (Burlingame, CA). Fluoro-Jade B was purchased from Chemicon (Temecula, CA).
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6

Bacterial Antibiotic Susceptibility Testing

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Mueller-Hinton (MH) agar and broth were purchased from Thermo Fisher Scientific (East Grinstead, UK). Luria-Bertani (LB) broth, LB agar, yeast extract, agar, terrific broth, ampicillin, amoxicillin, cefepime, ceftazidime, chloramphenicol, imipenem, meropenem, piperacillin, 2,3,5 tri-phenyl tetrazolium, sodium chloride, and maltose were obtained from Sigma-Aldrich (St. Louis, MO, USA). Tryptone was obtained from Oxoid (Hampshire, UK). All strains used and constructed within this study are listed in Table S1.
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7

Antibiotic Resistance Profile Determination

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Mueller Hinton (MH) agar and broth were purchased from Thermo Fisher Scientific (East Grinstead, UK). Luria-Bertani (LB) broth, LB agar, yeast extract, agar, terrific broth, ampicillin, amoxicillin, cefepime, ceftazidime, chloramphenicol, imipenem, meropenem, piperacillin, 2,3,5 tri-phenyl tetrazolium, sodium chloride and maltose were obtained from Sigma-Aldrich (St. Louis, MO, USA). Tryptone was obtained from Oxoid (Hampshire, UK) All strains used and constructed within this study are listed in Table S1.
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8

Quantifying Myocardial Infarct Size

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After completion of the reperfusion period, hearts of 6 animals in each group were excised and transferred to a Langendorff apparatus, perfused with normal saline for 1 min at a pressure of 100 cm H 2 O to flush out residual blood. The snare was securely re-tightened and 0.25% Evans Blue dye was injected to stain the normally perfused region. This procedure allowed visualizing the normal, non-ischemic region and the area at risk. The heart was then frozen and cut into 2-mm slices. Thereafter, the slices were stained by incubation at 37°C for 20 min in 1% 2,3,5-triphenyltetrazolium (Sigma Aldrich, St. Louis, USA) in a phosphate buffer at pH 7.4. This was followed by immersion in 10% formalin for 20 min to enhance contrast of the stain. The infarct size (IS) was quantified as a percentage of the area at risk (AAR) using a previously described computerized planimetric technique (SigmaScan 4.0; Systat Software Inc, Richmond, CA, USA) [11] (link). Arterial blood samples of these 6 animals (5 mL) were obtained at the end of reperfusion and centrifuged at 3,000 rpm for 10 min to obtain plasma. The plasma cardiac troponin I (cTnI) concentration was determined as previously described [12] (link), using a commercially available assay kit (R&D Systems, Minneapolis, USA).
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