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4 protocols using anti adma

1

Western Blot Optimization Protocol

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Whole cell lysate was prepared by scraping cells directly from 6-well plates in urea lysis buffer (8M urea, 1% β-mercaptoethanol, 50 mM Tris pH 7.5). Equal amounts of protein were separated by SDS-polyacrylamide gel prior to transferring onto nitrocellulose membranes. Membranes were blocked in 5% BSA before probing with desired primary antibodies and corresponding horseradish peroxidase conjugated secondary antibodies. Proteins were detected by radiography using ECL with film in dark room. Antibodies for western blotting were developed as previously described for anti-CARM1 substrates (NRIBme2a),41 (link) acquired either from Invitrogen (anti-ATR #710746), Millipore (anti-PRMT5, #07–405), or Cell Signaling (anti-ADMA, #13522, anti-SDMA, #13222, anti-ATR pS428 #2853, anti-CHK1 pS296 #2349, anti-CHK1 pS345 #2348, anti-CHK1 # 2360, anti-Actin #3700, anti-Mouse HRP #7076, anti-Rabbit HRP #7074).
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2

Western Blot Analysis of Protein Modifications

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Cells and tumor tissues were collected and lysed as described before44 (link). Briefly, 20–100 μg of protein was boiled at 95 °C for 5 min, loaded onto NuPAGE 4–12% Bis-Tris protein gels (Invitrogen) and transferred to nitrocellulose membranes (Bio-Rad) using the Mini-PROTEAN Tetra electrophoresis system (Bio-Rad). Primary antibodies used for membrane staining were anti-PRMT1 (Millipore, 7404; 1:1,000), anti-ADMA (Cell Signaling, 13522S; 1:1,000), anti-GAPDH (Santa Cruz Biotechnology, sc-32233; 1:5,000), anti-pH2A.X (Cell Signaling, 9718S; 1:1,000), anti-β-actin (Santa Cruz Biotechnology, sc-47778; 1:3,000) and anti-dsRNA (J2) (Scicons, 10010200; 1:5,000). Images were collected on an Odyssey scanner (LiCor) or Amershan ImageQuant 80 and analyzed with ImageQuant TL (v8.2.0) and ImageJ (v1.53a).
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3

Characterization of TDRD3 in Cell Lines

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The human VMRC-LCD cells, LCD cells stably expressing GFP/GFP-TDRD3 and MDA-MB-231 cells expressing Tet-on-sh TDRD3 have been described before [13 (link), 14 (link)]. Wild-type and Tdrd3-knockout MEF cells were generated from E12.5 mouse embryos following a standard MEF-generation protocol and the primary MEFs were cultured in Dulbecco’s Modified Eagle Medium (DMEM) containing 10% FBS. The HeLa, HEK293 and MDA-MB-231 cell lines were obtained from ATCC. All of the cell lines were maintained in DMEM containing 10% fetal bovine serum. The anti-TDRD3 antibody has been described before [13 (link)]. The anti-TDRD3 (CST) (cat#5942), anti-USP9X (cat#14898), anti-ADMA (cat#13522) and anti-SDMA (cat#13222) antibodies were purchased from Cell Signaling Technology. Anti-MCL-1 (cat# sc-819) was from Santa Cruz Biotechnology (Dallas, TX, USA). Anti-ACTIN (cat# A5316) was from Sigma Aldrich (St. Louis, MO, USA). Anti-PRMT1 (cat# A300722A) was from Bethyl Laboratories (Montgomery, TX, USA). Anti-TIAR (cat# 610352) and anti-G3BP (cat# 61126) were from BD Biosciences (San Jose, CA, USA).
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4

Quantitative Analysis of Protein Modifications

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Protein concentrations were determined using RC DC protein assay kit from Bio-Rad. Proteins were run on 8–15% gels and separated with SOS-PAGE. The membranes were blotted with the primary antibodies, anti-actin (Santa Cruz) at 1:1000, anti-PRMT5 (Abeam) at 1:1000, anti-PRMT1 (Cell signaling) at 1:1000, anti-SD MA (Cell signaling) at 1:1000, anti-ADMA (Cell signaling) at 1:1000, anti-MMA (Cell signaling) at 1:1000, anti-EZH2 (Cell signaling) at 1:1000 and anti-γH2Ax (Cell signaling) at 1:1000. Blots were incubated with primary antibodies overnight at 4°C. The next day, blots were washed in TBST, incubated with HAP-conjugated secondary antibodies for 1 hr and visualised on X-ray films with West Pico Chemiluminescent Substrate.
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