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Cfx96 system

Manufactured by Thermo Fisher Scientific
Sourced in United States

The CFX96 system is a real-time PCR detection system designed for qPCR and RT-qPCR applications. It features a 96-well plate format and can detect up to five fluorescent dyes simultaneously. The system is capable of precise temperature control and data analysis software for quantitative gene expression studies.

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5 protocols using cfx96 system

1

Quantifying PERV Copy Number in Porcine Cervix

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The DNA extracted from the cervix of the pigs before the admistration and on the seventh day after admistration was used to conduct the Real-time PCR, and the qPCR was conducted using the Bio-Rad CFX96 system with PowerUp™ SYBR™ Green Master Mix (A25742, Applied Biosystems, USA). The experiments were performed in triplicates, and the relative expression change of PERV copy number was calculated using the comparative Ct method (which compared the Ct value before and after admistration) with GAPDH of pig as the reference gene. The primers used were listed (Table 2).
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2

qPCR Analysis of miRNA and mRNA Expression in Liver Cancer Cells

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Total RNA was extracted from Huh-7 and HA22T cells using TRIzol® reagent (Invitrogen; Thermo Fisher Scientific, Inc.). Total RNA (1 µg) was reverse transcribed into cDNA using Superscript III transcriptase (Invitrogen; Thermo Fisher Scientific, Inc.) at 42°C for 60 min and 95°C for 5 min. qPCR was conducted using a Bio-Rad CFX96 system (Applied Biosystems) with SYBR-Green to detect the mRNA expression level of a gene of interest using the following thermocycling conditions: 95°C for 3 min, followed by 35 cycles at 95°C for 15 sec, 60°C for 30 sec and 68°C for 1 min. Expression levels were normalized to the GAPDH levels using the 2−ΔΔCq method (34 (link)). The primer sequences were as follows: miR-191-5p forward, 5′-CAACGGAATCCCAAAAGCAGCTG-3′ and reverse, 5′-TGTCGTGGAGTCGGC-3′; U6 forward, 5′-CTCGCTTCGGCAGCACA-3′ and reverse, 5′-AACGCTTCACGAATTTGCGT-3′; IGF2BP3 forward, 5′-ACTGCACGGGAAACCCATAG-3′ and reverse, 5′-ACTATCCAGCACCTCCCACT-3′; ZO-1 forward, 5′-GTGGGTAACGCCATCCTCTG-3′ and reverse, 5′-TCCGGGATTTCACCAGTGTG-3′; and GAPDH forward, 5′-TGCACCACCAACTGCTTAGC-3′ and reverse, 5′-GGCATGGACTGTGGTCATGAG-3′. All primers were purchased from Integrated DNA Technologies, Inc.
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3

Quantitative PCR Analysis using Bio-Rad CFX96

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The qPCR was performed using the Bio-Rad CFX96 system with PowerUp™ SYBR™ Green Master Mix (A25742, Applied Biosystems, USA). Threshold-cycle value (Ct value) was used for analysis for each qPCR reaction. The primers involved were displayed in Table S3.
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4

RNA Extraction and qRT-PCR Analysis

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TRIzol reagent (Invitrogen) was employed to obtain total RNA from cells. Reverse Transcription Kit (Applied Biosystems, CA, USA) or Taqman Advanced miRNA cDNA Synthesis Kit (Thermo Fisher Scientic) was used to reverse transcribe total RNA into cDNA. qRT-PCR was performed on Bio-Rad CFX96 System utilizing the ABI StepOnePlus system (Applied Biosystems). Fold expression changes were calculated with 2−∆∆Ct method, and GAPDH/U6 was endogenous control.
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5

Quantitative PCR with SYBR Green

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The PCR was conducted using the Bio-Rad CFX96 system with PowerUp™ SYBR™ Green Master Mix (A25742, Applied Biosystems, USA). The relative expression change was calculated using the comparative Ct method, which compared the Ct value of the no sgRNA group and the TATA-box targeting sgRNA group. The primers used were listed in Supplementary Table 7.
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