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4 protocols using sc 10809

1

NF-κB Activation in Astrocytes

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Human astrocytes were treated with medium alone (control) or TDZ (1 μM) for 24 or 72 h; after drug removal, cells were incubated with LPS-TNF-α for an 24 h. At the end of treatment, cells were lysed in the “subcellular fractionation buffer” (250 mM Sucrose, 20 mM HEPES, 10 mM KCl, 1.5 mM MgCl2, 1 mM EDTA, 1 mM EGTA, pH 7.4), containing 1 mM DTT and protease-inhibitor cocktail. The cells were centrifuged at 1,000 x g for 10 min to isolate nuclei, and the supernatants were centrifuged again at 10,000×g to obtain the cytosolic/membrane fraction. Nuclei were suspended in the subcellular fractionation buffer; the protein levels of NF-kB p65 were evaluated in cytoplasmic and nuclear extracts (40 μg) by western blot analysis, as described before, using the following primary antibodies: anti-NF-κB p65, 1:300, sc-372 Santa Cruz Biotechnology; histone H3 (nuclear marker), 1:500, sc-10809 Santa Cruz Biotechnology; GAPDH (cytoplasmatic marker).
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2

SDS-PAGE and Western Blotting for Viral Protein Detection

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SDS-PAGE was performed according to the Laemmli’s protocol using a Mini-PROTEAN® Tetra Cell (Bio-Rad, USA). The protein bands on SDS-PAGE gels were visualized by silver staining. To detect the L1 protein by Western blotting, rabbit anti-HPV16 L1 serum and HRP-conjugated goat anti-rabbit IgG polyclonal antibody (Pierce, USA) were used [37 (link)]. Histone H3 was detected using rabbit anti-human histone H3 (sc-10809, Santa Cruz Biotechnology, USA) or rabbit anti-human histone H3 (ab1791, Abcam, USA), while histone H2B was detected with rabbit anti-human H2B (ab61250, Abcam, USA). HRP-conjugated anti-rabbit immunoglobulin G (IgG) (Bethyl, USA) was used as secondary antibody for detecting histones.
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3

Western Blotting of Cancer Proteins

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Protein of cancer cells or tissues was prepared using 1× cell lysis buffer (Promega). Western blotting was performed as previously reported [12 (link), 13 (link), 49 (link)–51 (link)], with antibodies specific for NONO (ab70335), ERG (ab92513), Ets-1 (ab26096), FLAG (ab45766), HA (ab9110, Abcam Inc., Cambridge, MA), histone H3 (sc-10809), GST (sc-33614), and β-actin (sc-130300, Santa Cruz Biotechnology, Santa Cruz, CA).
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4

Immunohistochemistry of Mouse Tissue Sections

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Mouse tissues were fixed with 4% PFA/PBS for 3 hours at 4°C and cryopreserved in 30% sucrose in PBS. Tissues were embedded in OCT and stored at −80°C until use. Cryostat sections were cut at 10 μm and adhered to glass slides. Sections were washed with PBS, then incubated with 0.1 N HCl for 30 minutes at 37°C. After brief washing with PBS, sections were incubated with 0.5% Triton X-100 in PBS for 15 minutes at room temperature, then incubated with blocking buffer (3% BSA in TBST) for 30 minutes at room temperature. Sections were incubated at 4°C overnight with antibodies to BrdU (347580, BD bioscience; 1/100), H3K79me2 (ab3594, Abcam; 1/2000), Histone H3 (sc-10809, Santa Cruz; 1/2000), phosphorylated histone H3 (06–570, Millipore; 1/500) and cleaved caspase-3 (9661, Cell Signaling; 1/200). Sections were washed three times with TBST for 10 minutes and then incubated with appropriate secondary antibodies conjugated with Alexa 488 or 546 (A11001, A21208, Invitrogen; 1/300) for 1 hour at room temperature. Nuclei were stained with DAPI. Fluorescence microscopy was performed on a BX51 microscope with DP30BW CCD camera (Olympus) using 10x and 20x objective lenses. Images were collected with DP controller software (Olympus).
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