The largest database of trusted experimental protocols

4 protocols using pc 17 0 17 0

1

Single-cell lipid profiling by FACS

Check if the same lab product or an alternative is used in the 5 most similar protocols
HepG2 and C2C12 cells were grown in 75 cm 2 flasks until ~70-80% confluent before being treated overnight with CON or DHA media. The following day cells (~80-90% confluency) were trypsinised and counted. Prostate cells (LNCaP, DU145, PC3 and PNT1) were grown to ~80-90% confluency before harvest by trypsination followed by cell counting. 1-2 million cells of each line were centrifuged (300 x g, 5 min) and resuspended in PBS containing 10% FCS and 2 mM EDTA. This process was then repeated to remove all traces of growth media. Cells were placed on ice and sorted within an hour by FACS (BD FACSAria™ III, BD Biosciences, Sydney, NSW Australia) directly into a 96 well plate preloaded with methanol spiked with 0.01% BHT and internal standards (PC 17:0/17:0 and dihydrosphingomyelin, DHSM, 12:0; Avanti Polar Lipids, Alabaster, AL, USA). Internal standards were added at rate of 1000 fmol per well for fifty cells and 1.38 fmol per single cell. Plates were sealed and stored at -80ºC until analysis. Prior to analysis methanol:chloroform containing 5 mM ammonium acetate was added to each well to achieve a final ratio of 2:1 v/v (final volume 40 μl). Empty wells containing solvent and internal standard only were included for background subtraction.
+ Open protocol
+ Expand
2

Lipid Extraction and Derivatization Protocol

Check if the same lab product or an alternative is used in the 5 most similar protocols
Saturated and unsaturated FFAs were obtained from Sigma-Aldrich. Phospholipid standards (PC 17:0/17:0, PE 17:0/17:0, PS 17:0/17:0, PA 17:0/17:0, PG 17:0/17:0, PC 12:0/13:0, PE 17:0/14:1, PS 17:0/14:1, PA 12:0/13:0 and PG 12:0/13:0) were purchased from Avanti Polar Lipids. 1,1-carbonydiimidiazole, 1,4 dioxane, triethylamine, iodomethane, iodomethane-d3, iodoethane, formic acid, citric acid, disodium hydrogen phosphate ammonium formate, acetonitrile, 1-butanol, methanol and chloroform were purchased from Sigma Aldrich. All reagents were analytical grade or equivalent. All lipid extractions were performed in 2 mL polypropylene LoBind safe-lock tubes (Eppendorf).
+ Open protocol
+ Expand
3

Quantitative LC-MS Analysis of Phosphatidylcholine

Check if the same lab product or an alternative is used in the 5 most similar protocols
Lipid extraction and quantitative analyses of PC were performed using a triple quadrupole mass spectrometer LCMS-8040 (Shimadzu, Kyoto, Japan) equipped with an electrospray source ionization probe, as described previously [23 (link)], with certain modifications. PC (17:0/17:0) (Avanti Polar Lipids, Alabaster, AL) was added to each sample during extraction as an internal standard. For LC analysis, an Accucore RP-MS column (2.6 μm, 2.1 mm × 50 mm, Thermo Fisher Scientific, Waltham, MA) was used. Mobile phase A consisted of water/acetonitrile (60:40, v/v) and mobile phase B consisted of isopropanol/acetonitrile (90:10, v/v). Both mobile phases A and B were supplemented with 10 mM ammonium formate and 0.1% formic acid. The flow rate was 0.35 mL/min. The gradient was as follows: 40% B at 0 min, 40% B at 2 min, 52% B at 8 min, 60% B at 20 min, 100% B at 25 min, and 40% B at 30 min. For MS analysis, we performed multiple reaction monitoring with the transitions [M + NH4]+ → 184 for PC in the positive ionization mode, focusing on species abundant in mouse skeletal muscle that we previously identified [24 (link)]. The relative peak area for each species was normalized to the peak area of the internal standard and muscle weight.
+ Open protocol
+ Expand
4

Comprehensive Metabolite Profiling Approach

Check if the same lab product or an alternative is used in the 5 most similar protocols
High-performance liquid chromatography (HPLC)-grade ammonium acetate, acetonitrile, methanol, chloroform and water were procured from Burdick & Jackson (Morristown, NJ). MS grade formic acid, standards and internal standards, N-acetyl aspartic acid-d3, tryptophan-15N2, sarcosine-d3, glutamic acid-d5, thymine-d4, gibberellic acid, trans-zeatin, jasmonic acid, anthranilic acid-15N, and testosterone-d3, were purchased from Sigma-Aldrich (St. Louis, MO). Mixture of LPC 17:0/0:0, PG 17:0/17:0, PE 17:0/17:0, PC 17:0/17:0, TAG 17:0/17:0/17:0, SM 18:1/17:0, MAG 17:0, DAG 16:0/18:1, CE 17:0, ceramide 18:1/17:0, PA 17:0, PI 17:0/20:4, and PS 17:0/17:0. were obtained from Avanti polar lipids (USA) (Supplementary Table S1).
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!