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4 protocols using ctla4 bv786

1

Immunophenotyping of T-cell subsets in PBMC

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Human peripheral blood samples were collected in 4 heparin tubes at baseline, following nivolumab infusion and multiple timepoints following TIL infusion. Peripheral blood mononuclear cells (PBMC) were collected using a Ficoll gradient and cryopreserved in 10% DMSO and FBS. Cells were thawed in media, and subsequently stained in PBS containing 5% FBS (vol/vol, FACS buffer) with: CD3 BUV496, CD56 BUV563, CD4 BUV737, CD197 BV421, CD28 BV480, CD14 BV605, CD19 BV605, CD95 BV711, CD195 BV786, CD127 PE, CD194 PE-Cy7, CD45RA Alexa488, CD25 PerCP-Cy5.5, NKG2D APC, Tim3 BV421, PD1 BV480, CD226 BV711, CTLA4 BV786, Lag3 PE, TIGIT PE-Cy7, CD244 Alexa488, CD27 PerCP-Cy5.5, BTLA APC from BD Biosciences. Dead cells were excluded using the Zombie NIR Fixable Viability Kit from Biolegend, incubated at 4 °C for 1 hr, then washed twice with FACS buffer, and finally fixed in PBS containing 1% paraformaldehyde before running flow cytometry. Cells were acquired on a BD FACSymphony™ A5, and data were analyzed with FlowJo Version 10.0 software. All cell gates were drawn uniformly for analysis across patients and time points, with gating strategy provided in Supplementary Appendix 2. Plots of t-SNE were generated by Flowjo Version 10.6.1 according to the expression of CD45RA, CCR7, CD28 and CD95. Different memory T cell subsets were shown using separate colors.
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2

Temporal Expression of Checkpoint Receptors

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Anti-CD123 CAR T cells were harvested at serial time points during the expansion period and analyzed for surface expression of TIM-3, CTLA-4, LAG-3, and PD-1. Briefly, CAR T cells were harvested, CD3/CD28 dynabeads removed, and stained for CTLA-4-BV786, CD8-BV711, TIM-3-BV650, CD3-PerCPCy5.5, PD-1-PE, LAG-3-AlexaFluor 647 (BD Biosciences), and live dead aqua fixable viability stain (Life Technologies) prior to flow cytometric analysis. Unstained and FMO controls were used to identify gating boundaries.
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3

Multiparametric Immune Checkpoint Analysis

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PBLs and cancer cells from direct and indirect co‐cultures were used for multi‐marker flow cytometry to detect the expression of immune checkpoint markers. Cells were washed and resuspended in 100 μl of staining buffer containing Human Fc Block™ (564219, BD Biosciences). The expression of immune checkpoint receptors was determined using the following antibodies: PD‐1 PE‐Dazzle 594 (329940, Biolegend), VISTA BV421 (566750, BD Biosciences), CTLA‐4 BV786 (563931, BD Biosciences), TIM‐3 BV650 (565565, BD Biosciences), LAG‐3 PE (565617, BD Biosciences), TIGIT BUV395 (747845, BD Biosciences) and CD8 BV510 (563919, BD Biosciences). In parallel, we determined the expression of respective ligands: CD80 BV510 (740150, BD Biosciences), CD86 Alexa700 (564544, BD Biosciences), PD‐L1 PE‐Cy7 (558017, BD Biosciences), PD‐L2 BV786 (563843, BD Biosciences), VISTA BV421 (566750, BD Biosciences), MHC‐II BV650 (564231, BD Biosciences), GAL‐9 PE (565890, BD Biosciences) and PVR BUV395 (748272, BD Biosciences). Flow cytometry was performed by recording 50 000 events/sample using the LSRFortessa X‐20 instrument and FlowJo V10.7.1 software (BD Biosciences).
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4

Immune Checkpoint Modulation in Liver Cancer

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Peripheral blood mononuclear cells (PBMC) were extracted from healthy volunteers by density gradient centrifugation in a lymphocyte separation medium (MP Biomedicals, Irvine, CA, USA). T cells in PBMC were activated and expanded with CD3, CD28 antibody, and 10 ng/ml IL-2 (Thermo Fisher Scienti c, Waltham, MA, USA), and then co-cultured with Hep3B cells at a ratio of 10:1 in the presence of a uorescent caspase 3 substrate (BD Biosciences, San Jose, CA, USA).
After 48h, PBMC and Hep3B were collected separately. The expression of immune checkpoints and apoptosis rate were measured by ow cytometry (BD FACSCelesta). All antibodies were purchased from BD Biosciences, including CD45-APC-CY7, CD3-PERCP-CY5.5, CD8-PE-CY7, PD1-APC, TIM3-BV650, LAG3-BV421, CTLA4-BV786, Caspase3-PE, and PDL1-APC antibodies.
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