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Zytolight spec cdk4 cen12 dual color probe

Manufactured by ZytoVision
Sourced in Germany

The ZytoLight SPEC CDK4/CEN12 Dual Color Probe is a laboratory-grade fluorescence in situ hybridization (FISH) probe designed to detect the CDK4 gene and the chromosome 12 centromere (CEN12) region. The probe is used to assist in the detection and visualization of genetic alterations in samples.

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5 protocols using zytolight spec cdk4 cen12 dual color probe

1

CDK4 Amplification Detection by FISH

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CDK4 amplification testing by fluorescence in situ hybridization (FISH) was performed on FFPE tissue sections using commercial probes, ZytoLight SPEC CDK4/CEN12 Dual Color Probe (Zytovision, Bremerhaven, Germany), according to our previous research [3 (link)]. The experimental procedures were performed according to the manufacturer’s instructions. Amplification was defined by examining the CDK4/CEN12 ratio followed by the average CDK4 copy number: CDK4/CEN12 ratio < 2.5 with an average CDK4 copy number ≥ 5.0 signals per nucleus or a ratio > 2.5 or an uncountable sample due to clustering of green signals.
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2

FISH Probes for Genetic Biomarkers

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The following probes were used for FISH as indicated: ZytoLight SPEC CDK4/CEN 12 Dual Color Probe (ZytoVision); ZytoLight SPEC MYCN/2q11 Dual Color Probe (ZytoVision); Empire Genomics EGFR FISH Probe; Empire Genomics MYC FISH Probe; Empire Genomics FGFR2 FISH Probe; Empire Genomics CDK4 FISH Probe; Empire Genomics MYCN FISH Probe.
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3

CDK4 Amplification Analysis by FISH

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The amplification of CDK4 was evaluated by fluorescence in situ hybridization (FISH). The Zytolight SPEC CDK4/CEN 12 Dual Color Probe (ZytoVision; GeneDiagnostic Inc., Hangzhou, China) was applied for the detection of CDK4 amplification. The target and reference probes for CDK4 were labeled in green and orange, respectively. For analysis, 4–5 μm thick FFPE sections were deparaffinized, treated with warmed pretreated solution citric at 98°C, and digested in pepsin solution. Thereafter, a 10 μL probe was added to each slide. The target DNA and probes were co-denatured at 75°C for 10 min and incubated overnight at 37°C in a humidified hybridization chamber. Three post-hybridization washes were performed in 1× Wash Buffer-A at 37°C for 5 min. Finally, the slides were air-dried and counterstained with 4’,6-diamindino-2-phenylindole (DAPI)/antifade solution. Signals for each locus-specific FISH probe were assessed under an Olympus BX51 microscope (Olympus Corporation, Tokyo, Japan). FISH results were based on at least 50 evaluable tumor nuclei. The nuclei were considered amplified for CDK4 when the CDK4/CEN12 ratio was >2.
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4

Fluorescence In Situ Hybridization Assay

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Slides were fixed in MeOH:acetic acid for 10 min at −20 °C followed by a wash of the slide in PBS for 5 min at room temperature. Slides were incubated in pepsin solution (0.001 N HCl) with the addition of 10 µl pepsin (1 g 50 ml−1) at 37 °C for 10 min. Slides were washed in 0.5× saline-sodium citrate (SSC) buffer for 5 min and dehydrated by washing in 70%, 90% and 100% cold ethanol (stored at −20 °C) for 3 min. Dried slides were stained with 10 µl Vysis LSI N-MYC SpectrumGreen/CEP 2 SpectrumOrange Probes (Abbott), ZytoLight SPEC CDK4/CEN 12 Dual Color Probe (ZytoVision) or ZytoLight SPEC MDM2/CEN 12 Dual Color Probe (ZytoVision), covered with a coverslip and sealed with rubber cement. Denaturing occurred in a ThermoBrite system (Abbott) for 5 min at 72 °C followed by 37 °C overnight incubation. The slides were washed for 5 min at room temperature in 2× SSC/0.1% IGEPAL, followed by 3 min at 60 °C in 0.4× SSC/0.3% IGEPAL (Sigma-Aldrich) and an additional wash in 2× SSC/0.1% IGEPAL for 3 min at room temperature. Dried slides were stained with 12 µl Hoechst 33342 (10 µM, Thermo Fisher Scientific) for 10 min and washed with PBS for 5 min. After drying, a coverslip was mounted on the slide and sealed with nail polish. Images were taken using a Leica SP5 Confocal microscope (Leica Microsystems).
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5

Fluorescence in situ Hybridization Analysis

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FISH was performed according to our previous research [14 (link)]. CDK4, TERT and BRAF amplification tests were performed on FFPE tissue sections using commercial probes, ZytoLight SPEC CDK4/CEN12 Dual Color Probe, BRAF/CEN 7 Dual Color Probe and TERT/CEN5 Dual Color Probe (Zytovision, Bremerhaven, Germany). The experiment procedures were performed according to the manufacturer's instructions.
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