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261 protocols using l tryptophan

1

Amino Acid Standard Preparation Protocol

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Sodium acetate trihydrate (pro analysis), acetic acid (glacial), acetonitrile (HPLC grade), and methanol (HPLC grade) were purchased from Merck KGaA (Darmstadt, Germany). Disodium hydrogen orthophosphate heptahydrate (98.0–102.0%), ethylenediamine tetraacetic acid (EDTA) (>99%), and orthophosphoric acid (>85%) were purchased from VWR Chemicals BDH (Radnor, PA, USA). Triethylamine (>99%), DL-norleucine (98%), L-asparagine (>98%), L-glutamine (>99%), L-tryptophan (>98%), DL-dithiothreitol (>985), and phenylisothiocyanate (>99%) were purchased from Sigma-Aldrich (St. Louis, MO, USA).
The following reference materials were purchased from Sigma-Aldrich: Amino acid standard solution AAS18 (2.5 μmol mL−1 of 18 proteinogenic amino acids in 0.1 N HCl), Amino acid standard solution A6407 (2.5 μmol mL−1 of 26 physiological amino acids in 0.1 N HCl), Amino acid standard solution A6282 (2.5 μmol mL−1 of 14 physiological, basic amino acids in 0.1 N HCl).
A proteinogenic amino acid standard consisting of Amino acid standard solution AAS18 and 0.05 μmol mL−1 of L-asparagine, L-glutamine and L-tryptophan was prepared. A composite physiological amino acid standard was prepared from equal volumes of amino acid standard solutions A6407 and A6282.
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2

Femoral Defect Model in Mice

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Five-week-old C57BL/6 mice were used in the experiments, according to the Guidelines for Animal Research of Okayama University Dental School, under the approval of the Okayama University Ethical Committee (OKU-2013125). For analysis of the effect of L-tryptophan or L-kynurenine in vivo, mice were injected intraperitoneally with 50 mg/kg/day of L-tryptophan (Sigma-Aldrich) or L-kynurenine sulfate (Sigma-Aldrich) for consecutive three weeks, and then femurs were dissected from mice for mBMSC isolation or further micro-CT and histological analysis.
For the surgical experiment, mice were anesthetized by inhalation of Isoflurane (Isoflu: Dainippon Sumitomo Pharma Co., Osaka, Japan). The left lower limb was shaved and aseptically cleaned with 70% ethanol. An incision of approximately 15 mm in the frontal skin of the mid-femur was performed to expose the muscle. The muscle was then elevated and the periosteum was separated to expose the femur surface. A drill was used to make a surgical defect of 1 mm in diameter in the anterior portion of the diaphysis, 5 mm above the knee joint [27 (link)]. The diaphysis was irrigated with saline during the surgery. Thereafter, the muscles were replaced in the original position and the incision line was sutured.
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3

Fibroblast Isolation and Treatment

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Primary fibroblasts were isolated from the skin of nonstressed Swiss mice (1–2 months) by the standard explant technique as previously described [6 (link), 37 ]. The cells were routinely maintained in Dulbecco’s modified Eagle’s medium (DMEM) (Sigma-Aldrich) supplemented with 10% fetal bovine serum (FBS) (Cultilab Ltda, Campinas, Brazil) and antibiotics (100 UI/ml penicillin, 50 μg/ml kanamycin, 100 μg/ml streptomycin, and 6 μg/ml amphotericin B) (Sigma-Aldrich) at 37°C and 5% CO2. Cells were seeded for experiments when they reached about 95% confluence. Experiments were performed at passages 3 to 10, at least three times, in triplicate.
In all experiments, cells were treated with epinephrine (100 μM) (Hipolabor, Minas Gerais, Brazil), L-tryptophan (10 μM) (Sigma-Aldrich), or epinephrine plus L-tryptophan [38 (link)]. The dose of 10 μM of L-tryptophan was based on a dose-dependent and time-dependent study (data not shown) and previous study [39 (link)]. Drugs were prepared in DMEM with 2% FBS and antibiotics.
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4

Evaluating SERS Substrate Sensitivity

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Solutions of several analytes were used to investigate the quality and sensitivity of SERS substrates. First, rhodamine 6 G dye (Sigma-Aldrich, product number 252433) was used. Isopropanol R6G solutions were prepared with concentrations in the 10−9–10−5 M range. Next, we used L-tryptophan (Sigma-Aldrich, product number T8941) as a model organic compound with a low molecular weight, whose electronic resonance (280 nm) is far from the plasmonic resonance of Au films, to test the applicability of the developed SERS substrates for detection of biologically relevant molecules. Finally, isopropanol solutions of Bovine Serum Albumin (BSA) (MP Biomedicals, product number 02152401) and keratin hydrolysates were chosen as a test biomacromolecular objects. Isopropanol solution of tryptophan was prepared of 99% Sigma-Aldrich L-tryptophan (Product number T8941). Keratin water solution was prepared from a human nail as it was described in18 (link). To apply the solutions to the substrate, the 50 μl Discovery micropipette was used.10 μl of solution was applied to all substrates. Surface area of substrates was roughly 0.25 cm2. Prepared substrates are sensitive to the choice of solvent, see Fig. S1.
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5

Quantification of IAA Production

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The measurement of IAA production was conducted by using a modified quantification method based on Bric et al. (1991) (link). Briefly, Bv-DS1 was cultured for 24 h in 1 ml of LB liquid medium. Then 10 μl of bacterial inoculums were transferred into the same medium supplemented with 100 μg mL−1 of L-tryptophan (Sigma-Aldrich) followed by 7 days of incubation at 28°C on a shaking incubator (200 rpm/min). Then, bacterial cells were removed from the culture medium by centrifugation (4,000 × g, 5 min). The supernatant was then transferred with Salkowski reagent (49 ml of 35% HClO4, 1 ml of 0.5 M FeCl3) to an ELISA plate in a 1:1 the ratio, which was incubated at room temperature for 35 min. The absorbency was then read at 490 nm by using a multi-functional enzyme labeller (CLARIOstar Plus, BMG, Germany). The uninoculated tryptophan-containing medium mixed with Salkowski reagent was used as a blank. Three independent cultivations were used as triplicated replicates. A standard curve was generated from serial dilutions of IAA stock solution.
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6

Analytical Standards for Tea Bioactives

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Catechin (C, ≥98%), galloCatechin (GC, ≥98%), galloCatechin-3-gallate (GCG, ≥98%), epiCatechin (EC, ≥98%), epiCatechin-3-gallate (ECG, ≥98%), epigalloCatechin (EGC, ≥98%), epigalloCatechin-3-gallate (EGCG, ≥98%), caffeine (CAF, ≥98%), theaflavins (TF, ≥95%), theaflavins-3-gallate (TF3G, ≥98%), theaflavin-3′-gallate (TF3′G, ≥98%), theaflavine-3,3′-digallate (TFDG, ≥98%), quercetin-3-O-galactoside (≥98%), myricetin-3-O-galactoside (≥98%), kaempferol-3-O-rutinoside (≥98%), vitexin (≥98%), astragaloside (≥98%), quercetin (≥98%), and kaempferol (≥98%) were purchased from Shanghai yuanye Bio-Technology Co., Ltd. (Shanghai, China). l-alanine, l-arginine, l-aspartic acid, l-cystine, l-glutamic acid, glycine, l-histidine, l-isoleucine, l-leucine, l-lysine, l-methionine, l-phenylalanine, l-proline, l-serine, l-threonine, l-tyrosine, l-valine, l-asparagine, l-glutamine, theanine, γ-aminobutyric acid, and l-tryptophan were purchased from Sigma (Sigma-Aldrich Co., St. Louis, MO, USA). Anthrone reagent and ninhydrin/formic acid reducing agent were purchased from BeiJing DingGuochangSheng Biotech. Co., Ltd. (Bejing, China). Ethyl caprate (≥99%) was purchased from Shanghai Macklin Biochemical Technology Co., Ltd. (Shanghai, China), and n-alkane mixed standard C7-C40 was purchased from o2si (o2si smart solutions—an LGC Standards Company, Charleston, SC, USA).
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7

Preparation of Amino Acid Solutions

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L-Tyr (≥98%), potassium chloride (≥99.0%) (KCl), FeCN (≥99.5%), SDS (≥99.0%), NP (≥99%), pyrrole (98%), L-tryptophan, L-cysteine, and L-phenylalanine were purchased from Sigma-Aldrich (St. Louis, MO, USA).
The preparation of the solutions of these compounds was performed with ultrapure water (18.3 MΩ × cm, Milli–Q Simplicity® Water Purification System from Millipore Corporation, Burlington, MA, USA).
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8

Analytical Grade Chemicals for HPLC-MS Analysis

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Chemicals were of analytical grade and obtained from Sigma‐Aldrich (Taufkirchen, Germany) unless otherwise stated. HPLC LC–MS grade and supergradient HPLC grade acetonitrile and HPLC LC–MS grade methanol were obtained from VWR Chemicals (Darmstadt, Germany). Formic acid was purchased from Carl Roth (Karlsruhe, Germany), and Formic acid Optima LC–MS grade from Fisher Chemicals (Waltham, USA). Trans‐ferulic acid (purity 99%), caffeic acid (purity ≥98%), p‐coumaric acid (purity ≥98%), trans‐cinnamic acid (purity 99%), l‐tryptophan (purity ≥98%), and 3,4‐dimethoxycinnamic acid (purity 99%) were obtained from Sigma‐Aldrich (Taufkirchen, Germany). Nonanedioic acid (azelaic acid) (purity ≥98%), octanedioic acid (suberic acid) (purity ≥98%), (9, 10, 13)‐trihydroxy octadecenoic acid (purity >99%), and (9,12,13)‐trihydroxy octadecenoic acid (purity >99%) were purchased from Larodan (Solna, Sweden).
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9

Amino Acid Analysis by UHPLC

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Sulfuric acid, sodium hydroxide, acetonitrile (Ultra high performance liquid chromatography (UHPLC) grade), ethylenediaminetetraacetic acid (EDTA), sodium borate, and hydrochloric acid were obtained from Panreac (Castelar del Vallés, Barcelona, Spain). Sodium acetate (anhydrous), trimethylamine (TEA), phosphoric acid, ammonium molybdate, and methyl cellulose were purchased from Sigma-Aldrich (Darmstadt, Germany). Standard of amino acids (L-arginine (Arg), L-alanine (Ala), L-asparagine (Asn), L-aspartic acid (Asp), glycine (Gly), L-glutamic acid (Glu), L-glutamine (Gln), L-histidine (His), L-isoLeucine (Ileu), Leucine (Leu), L-Lysine (Lys), L-norvaline (Nor), L-phenylalanine (Phe), L-proline (Pro), L-serine (Ser), L-threonine (Thr), L-tryptophan (Trp), L-tyrosine (Tyr), and L-valine (Val)) were purchased from Sigma-Aldrich (Steinheim, Germany). All the other chemicals and reagents used were of analytical grade.
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10

Purification and Analysis of AroH

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The plasmid AroHhis, which contains the entire AroH cDNA along with a C-terminal 6xHis tag cloned in the BamHI/NotI sites of a pET22b prokaryotic expression vector, was purchased from GenScript (New Jersey, USA). PLP, L-tryptophan, L-tyrosine, L-phenylalanine, α-aminoadipate, α-ketoglutarate, α-ketoadipate, L-glutamate dehydrogenase from bovine liver (GDH), 3-acetylpyridine adenine dinucleotide (APAD+), L-lactic dehydrogenase (LDH), and isopropyl-β-D-thiogalactopyranoside, were purchased from Sigma. All other chemicals were of the highest purity available.
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