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28 protocols using gsk j4

1

Culturing Neural Cells for Drug Screening

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HEK293 cells were cultured in DMEM supplemented with 10% FBS and Be(2)-C cells in DMEM/F12 supplemented with 10% FBS. Cells were transfected with Fugene HD (Promega Corporation). Primary hippocampal neurons were isolated from 16.5-days mouse embryos and seeded in neurobasal medium (Invitrogen) supplemented with 1% FBS, B27 (Invitrogen), and penicillin/streptomycin on poly-D-lysine-coated culture dishes at days in vitro (DIV) 0. Glutamate (25 μM) was added at plating only, and half of the medium was replaced by medium without glutamate the next day and every 4 days afterwards. For drug treatment, 0.5-μM GSK126 (Selleckchem) was dissolved in DMSO and applied from DIV 7, replaced with fresh drug containing medium at DIV 10, and samples were collected at DIV 14. For GSK J4 treatment, GSK J4 (Selleckchem) in DMSO was applied at 0.1 μM at DIV 7 and samples were collected at DIV 10 before neurons showed morphological signs of suboptimal growth.
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2

Antibody Validation for Signaling Pathways

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Antibodies to H3K27me3, JMJD3, p-Smad3, Smad3, p-AKT, AKT, p-ERK1/2, ERK1/2, Notch1, Jagged-1, UTX and DNMT1 were purchased from Cell Signaling Technology (MA, USA). Antibodies to fibronectin, α-SMA, collagen III, JMJD3, TGF-β1, Notch3 were purchased from Abcam (MA, USA). An antibody to Smad7 was obtained from Santa Cruz Biotechnology (CA, USA). An antibody to β-actin, PTEN and FBXW7 were obtained from proteintech (Wuhan, China). β-tubulin was purchased from Sigma-Aldrich (MO, USA). GSKJ4 was purchased from Selleck (Houston, USA). DMSO and other chemicals were obtained from Beyotime (Shanghai, China). Lipofectamine 3000 was obtained from Invitrogen-Thermo Fisher Scientific (CA, USA).
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3

Colorectal Cancer Cell Line Profiling

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Human CRC cell lines HCT116 and SW620 were purchased from American Type Culture Collection. Cells were cultured in Dulbecco’s modified Eagle medium containing 10% fetal calf serum medium. All CRC cells were negative for mycoplasma contamination prior to use.
Oxaliplatin, GSK-J4, and EPZ-6438 were purchased from Selleck. DAPI (#5748) was obtained from R&D Systems. The following antibodies were used: H3K27me3 (9733, Cell Signaling Technology) for IHC, H3K27me3 (07–449; Millipore) for ChIP and western blot, H3K4me3 (61379, ActiveMotif), H3 (sc-10809, Santa Cruz), PAPR (9542, Cell Signaling Technology), γH2A.X (3322, Abways), and cleaved caspase 3 (9664, Cell Signaling Technology).
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4

Lung Cancer Cell Line Treatment Protocol

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A549, H1703, and H1975 cells were from ATCC. All cell lines were grown in RPMI medium with 10% fetal bovine serum (FBS), penicillin (100 U/mL) and streptomycin (100 µg/mL). Cells were plated 48 h before treatment. Cisplatin was obtained from Sigma Aldrich (St. Louis, MO, USA). ML324, JIB04, GSK-J4 and Paclitaxel were from Selleck Chemicals (Houston, TX, USA). TAME is from Cayman Chemical (Ann Arbor, MI, USA).
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5

Epigenetic Regulation of Liver Fibrosis

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We used DZNep (Selleck, S7120) , GSK126 (Selleck, S7061) and GSK-J4 (Selleck, S7070) as inhibitors of EZH2 and JMJD3 respectively, which are with DMSO (Dimethyl Sulfoxide) solvent, and used DMSO as negative control. Rat primary HSCs were treated with DZNep (1 μM), GSK126 (5 or 10 μM) or GSK-J4 (5 μM). DZNep and GSK126 treatment were also conducted in JS1 and LX-2 cell lines. Experimentally diseased mice (as below) were administered with DZNep (1 mg/kg) through intraperitoneal injection twice a week. The H3K27me2/3 levels in HSCs and in liver tissue were analyzed by Western blot to ascertain the inhibitory effect.
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6

Culturing Mammary Epithelial Cell Lines

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Immortalized human mammary epithelial cells (HMLE), including cells expressing the empty vector (pWZL), Snail or Twist were maintained as in Mani et. al [4 (link)]. MCF10A cells were cultured in 2D as a monolayer, as described in Debnath et al. [67 (link)]. 4T1 cells were cultured as in Yang et al. [68 (link)]. MCF7 and MDA-MB-231 cell lines were cultured in Dulbecco’s Modified Eagle Medium (DMEM) with 10% fetal bovine serum and penicillin/streptomycin. TGFB (R&D Biosystems, Minneapolis, MN, USA) was reconstituted in sterile 4 mM HCl containing 0.1% bovine serum albumin. TGFB was added to the culture medium at a concentration of 2.5 ng/ml unless otherwise indicated, with the reconstitution solution serving as a vehicle control. GSK-J4 (Selleckchem, Houston, TX, USA) was added to the culture medium at a concentration of 50 nM, with DMSO as a vehicle control.
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7

Macrophage Kdm6a/b Regulation in Zol-induced Inflammation

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The murine macrophage-like RAW 264.7 cell line was obtained from the American Type Culture Collection (Maryland, USA); Antibodies against Kdm6a, Kdm6b, H3, H3k27me3 and GAPDH were purchased from Cell Signalling Technology (Beverly, MA, USA); GSDMD was obtained from Abcam (London, UK); Caspase 1 antibody and goat anti-rabbit IgG (H + L) FITC were generated by ABclonal Biotechnology (Wuhan, China); The Kdm6a and Kdm6b inhibitor GSK-J4 was purchased from Selleck Chemicals LLC (Houston, TX, USA); APC anti-mouse CD11b antibody and PE anti-mouse F4/80 antibody were purchased from BD Biosciences (New Jersey, USA); Foetal bovine serum was purchased from Life Technologies (now Thermo Fisher Scientific Inc, NY, USA); Zol was generated by Novartis Pharma Schweiz AG (Basel, Switzerland).
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8

Zebrafish Hair Cell Damage and Recovery

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All zebrafish animal experiments were performed following the institutional guidelines approved by the Institutional Animal Care and Use Committee of Fudan University, Shanghai. GSK-J4 (Selleck) was dissolved in dimethyl sulfoxide (DMSO, Sigma-Aldrich) at a stock concentration of 10 mM and further diluted to the desired concentrations in fresh egg water. DMSO was selected as the vehicle control group. GSK-J1, inactive control compound GSK-J2, and the MAPK/ERK kinase inhibitor U0126 were purchased from MedChem Express. For hair cell damage, neomycin sulfate (Sigma-Aldrich) was added to 5 days post-fertilization (dpf) larvae at a final concentration of 400 μM and incubated for 1 h. This was followed by three rinses in fresh egg water, and the zebrafish larvae were allowed to recover for 24 h or 48 h at 28.5°C. Drug solutions were replaced after 24 h. The larval zebrafish were then fixed with 4% paraformaldehyde (PFA) in phosphate buffered saline (PBS) at 4°C until further processing.
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9

Jumonji Inhibitor Compound Preparation

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Chloroquine (Sigma-Aldrich) was
dissolved in H2O, whereas all other drugs were dissolved
in DMSO (Sigma-Aldrich). The Jumonji inhibitors used in this study
were obtained from Cayman Chemical, Ann Arbor, MI (GSK-J4, GSK-J5,
and CPI-455), Selleck Chemicals, Houston, TX (ML324), and Xcess Biosciences,
San Deigo, CA (KDM5-C70 and SD-70). JIB-04 E and Z isomers were synthesized
as previously described.23 (link) Compounds freshly
dissolved in DMSO were aliquoted to minimize freeze/thaw cycles and
stored at −20 °C.
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10

Cell Viability Assay with THP-1 Cells

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THP-1 cell lines were cultured in RPMI supplemented with 10% FCS, 100 μg ml−1 of penicillin and 100 μg ml−1 of streptomycin and 1 μg ml−1 puromycin. ABT-199 was purchased from ChemieTek (Indianopolis, IN). Cantharidin, digoxigenin, proscardillin, wortmannin, SB203580, TOFA, IC 261 and vorinostat were all purchased from Sigma. ABT-737, GSK-J4, GSK-126, G007-LK, MM-102, SKI-606 and JNK-IN-8 were purchased from Sellekchem (Houston, TX). LB100 (HY-18597) was obtained from MedChemExpress (MonMouth Junction, NJ). After 4 days of Dox induction (or control without Dox), cells were plated in RPMI 20% foetal bovine serum at 2 × 105 ml−1 in 96-well plate with twofold dilutions of each drug performed in duplicate. At 72 h, cell viability was measured using a plate-reader after addition of 10% Presto Blue Cell Viability Reagent (ThermoFisher Scientific) at emission fluorescence 590 nm. IC50 curves were calculated for each drug in the presence and absence of Dox using GraphPad Prism 6.0 (dose response inhibition) and the difference in IC50 was plotted as a percentage of control (no dox). For ACACA validation, transduced THP-1 cells were induced with Dox for 3 days, then washed into low serum RPMI (0.5%) and cultured at low cell density for 7 days +/−TOFA before cell growth was measured with Presto Blue on a plate reader.
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