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19 protocols using anti rhoa

1

Measuring Small GTPase Activities

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Neutrophils were lysed and centrifuged at 14,000 g for 10 min at 4°C. The supernatants were incubated with the GST-PBD (p21-binding domain of PAK1) beads for Rac1 and Cdc42 activity assays or GST-RBD (Rho-binding domain of Rhotekin) for RhoA activity assay following the manufacturer’s instructions. Levels of bead-bound GTP-Rac1/Cdc42/RhoA and total Rac1/Cdc42/RhoA were analyzed by immunoblot with antibodies as follows: anti-Rac1 (1:1,000; Abcam), anti-Cdc42 (1:1,000; Abcam), anti-RhoA (1:1,000; Abcam).
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2

Investigating CCL2's Impact on RhoA and Rac1

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In order to determine whether CCL2 could affect RhoA and Rac1, the experiment was divided into two groups. Firstly, LNMTca8113 cells were starved for 24 h. One group was treated with 100 ng/mL CCL2, and the other group was not treated with CCL2. The Lysis Buffer (Solarbio,Protein Extraction Kit) was added, and the protein concentration was standardized and adjusted to 2 mg/mL. The beads were eluted in 1× SDS buffer. Primary antibodies were as follows: anti-RhoA (Abcam,Hong Kong Limited) and anti-Rac1 (Abcam,Hong Kong Limited). The signal intensity was measured using a spectrophotometer. Finally, the image analysis software(GraphPad Prism 9) was used for data processing.
GST-PAK pull-down assay followed the instruction book of RhoA/Rac1 Activation Assay Combo Biochem Kit (Cytoskeleton, Inc, USA.) .
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3

Protein Extraction and Western Blot Analysis of Renal Cells

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Renal cortex was homogenized and extracted in a cold buffer containing 0.1 mol/l Tris (hydroxymethyl) aminomethane HCl. The tissue extracts were then partially purified by ethanol extraction. Proteins from GENs or mesangial cells were isolated from using RIPA buffer (Thermo Scientific, USA). 50 μg of protein samples were isolated in 12% SDS-polyacrylamide gel electrophoresis (SDS-PAGE), and transferred to polyvinylidene difluoride (PVDF) membranes (Invitrogen, USA) by electroblotting. The membranes were blocked in 5% non-fat dried milk for 60 min at room temperature. For the detection of RhoA, the membrane and cytoplasm proteins were extracted from mesangial cells using Membrane and Cytosol Protein Extraction Kit (Beyotime Biotechnology), then membrane and cytosolic proteins were separated on SDS-PAGE. The membranes were probed with first primary antibody anti-ETBR (Abcam, USA), anti-ETAR (Abcam, USA), anti-p-p65 (Invitrogen, USA), anti-p65 (Invitrogen, USA), anti-CTGF (Abcam, USA), anti-RhoA (Abcam, USA), anti-collagen IV (Abcam, USA), anti-Fibronectin (Abcam, USA), anti-p21 (Abcam, USA) and anti-β-actin (Invitrogen, USA) and incubated at 4°C overnight. After washing with PBST, membrane was cultivated with secondary antibody for 60 min at room temperature. β-actin was used as internal control.
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4

RhoA/ROCK2 Signaling in Spinal Cord

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Mice were anesthetized using sodium pentobarbital (60 mg/kg i.p.). The dorsal half of the 4–5th lumbar spinal cord was removed, immediately frozen in liquid nitrogen, and stored at −80 °C. Tissues were sonicated in ice-cold (4 °C) RIPA lysis buffer (Beyotime Institute of Biotechnology) containing a cocktail of protease and phosphatase inhibitors. After incubation on ice for 15 min, homogenates were centrifuged at 12,000 rpm for 20 min at 4 °C. Protein concentrations were measured using a bicinchoninic acid (BCA) Protein Assay Kit (Pierce). Protein samples were then denatured at 95 °C and separated by 8% SDS-PAGE. After transfer to PVDF membranes and blocking with 5% nonfat milk, the membranes were incubated overnight at 4 °C with anti-RhoA (1:500; Abcam), anti-ROCK2 (1:500; Abcam) or anti-β-actin (1:1000; Abcam) primary antibodies. The membranes were washed with wash buffer and incubated for 2 h with alkaline phosphatase-conjugated secondary antibody (1:500; Santa Cruz Biotechnology, Santa Cruz, CA) at room temperature. The immune complexes were then detected using a nitro blue tetrazolium/5-bromo-4-c- hloro-3-indolyl phosphate assay kit (Sigma, St. Louis, MO). Western blots were analyzed using densitometry with Adobe Photoshop software (Adobe Systems Inc.).
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5

Synthetic Elastin Peptides for Cell Research

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Synthetic elastin peptides (VGVAPG, AGVPGLGVG, GRKRK and TAMRA-AGVPGLGVG) were purchased from Proteogenix. Mouse anti-MMP-2 and anti-uPA antibodies were from Calbiochem. Y27632, blebbistatin, U0126, PD150606, lactose, chondroitin sulphate, nifedipine and EDTA were from Sigma-Aldrich. EGCG was purchased from Enzo Life Sciences. Rabbit anti-Hsp90, anti-cleaved caspase-3, anti-integrin αV, anti-p-ERM, mouse anti-αvβ3 and anti-αvβ5 integrin antibodies were from Ozyme. Rabbit anti-RPSA, anti-MMP-14, anti-calpain1, anti-ROCK2, anti-myosin light chain kinase, mouse anti-RPSA, anti-RhoA, anti-ROCK1 and mouse IgM isotype control antibodies were purchased from Abcam. Rabbit anti-p-LIMK-and goat anti-cofilin and anti-actin were from Santa Cruz. Anti-integrin αvβ3 antibody was purchased from Millipore. Annexin-5 alexa fluor® 568, CellTrace Calcein Red-Orange, AM and DiOC183 were from Invitrogen.
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6

Measurement of Active RhoA in Bronchial Tissues

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The active form of RhoA, GTP-bound RhoA, in BSMs was measured by GTP-RhoA pull-down assay as described previously [19 (link)]. In brief, the isolated main bronchial tissues were equilibrated in oxygenated Krebs–Henseleit solution at 37 °C for 1 h. After the equilibration period, the tissues were stimulated with PGD2 (10−5 M) or ACh (10−3 M) for 15 min, and were quickly frozen with liquid nitrogen. The tissues were then lysed in lysis buffer with the following composition (mM): HEPES 25.0 (pH 7.5), NaCl 150, IGEPAL CA-630 1%, MgCl2 10.0, EDTA 1.0, glycerol 10%, 1× protease inhibitor cocktail (Nakalai tesque, Kyoto, Japan), and 1× phosphatease inhibitor cocktail (Nakalai tesque). Active RhoA in tissue lysates (200 µg protein) was precipitated with 25 µg GST-tagged Rho binding domain (amino acids residues 7–89 of mouse rhotekin; Upstate, Lake Placid, NY, USA), which was expressed in Escherichia coli and bound to glutathione-agarose beads. The precipitates were washed three times in lysis buffer, and after adding the SDS loading buffer and boiling for 5 min, the bound proteins were resolved in 15% polyacrylamide gels, transferred to nitrocellulose membranes, and immunoblotted with rabbit polyclonal anti-RhoA (Abcam, Cambridge, UK) as primary antibodies.
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7

Western Blot Analysis of Signaling Proteins

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Western blot analysis was carried out using standard methods. Total protein was extracted from the cultured cells or tumor tissues with lysis buffer. Protein concentration was determined by using a BCA method. The protein sample was then separated by 8-10% SDS-PAGE and transferred onto PVDF membranes. The membranes were incubated with primary antibodies overnight at 4°C. Membranes were probed with anti-RAB1B (1:1000), anti-Ras (1:5000), anti-Raf1 (1:1000), anti-Rac1 (1:500), anti-RhoA (1:5000), anti-CDC42 (1:1000), anti-β-actin (1:5000), and HRP conjugated anti-mouse (1:5000) and anti-rabbit (1:5000) (Abcam, Burlingame, CA).
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8

Investigating Neuroprotective Mechanisms

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NaHS was obtained from Sigma Chemical (St. Louis, USA); [γ-32P] ATP was obtained from China Tongfu Co., Ltd (Beijing, China); PKG1, ATP, DT-2, and ACh were obtained from Sigma-Aldrich (St. Louis, MO, USA); LDH test kit was obtained from Nanjing Jiancheng Biotechnology (Nanjing, China); NSE Assay Kit was obtained from Jiangsu Meimian Industrial, Co., Ltd (Jiangsu); Fluo-8 AM, anti-ROCK2 (catalog number ab125025), anti-Phospho-RhoA Ser188 (catalog number ab41435), and anti-RhoA (catalog number 187027) were purchased from Abcam (San Francisco, California, USA); and anti-β-actin (catalog number AF7018) and goat anti-rabbit IgG secondary antibody (catalog number S0001) were purchased from Affinity Biosciences (Changzhou, China).
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9

Protein Expression Analysis of Liver Tissue

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Liver tissue protein was obtained from tissue lysates for western blotting. The protein levels were determined using a BCA assay kit (Tiangen, Beijing, China). Denatured proteins were separated on 10% Tris-glycine polyacrylamide gels by SDS-PAGE and transferred to PVDF membranes. The PVDF membranes were incubated overnight at 4 °C with anti-collagen I (Abcam, Cat. ab138492), anti-MMP1 (Abcam, Cat. ab137332), anti-α -SMA (Abcam, Cat. ab32575), anti-TIMP1 (Abcam, Cat. ab109125), anti-NOX4 (Abcam, Cat. ab109225), anti-RhoA (Abcam, Cat. ab187027), anti-ROCK1 (Abcam, Cat. ab45171), and anti-GAPDH (Abcam, Cat. ab8245). The corresponding membrane-bound antibodies were detected by a hypersensitive chemiluminescence detection reagent.
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10

Quadriceps Muscle Protein Analysis

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Total protein of quadriceps muscle was harvested and lysed in buffer containing complete protease inhibitor cocktail (Sigma) as described previously.3 (link) Muscle tissue cytosolic and nuclear proteins were separated by using a NE-PER kit (Pierce Biotechnology, Rockford, IL, USA) according to the manufacturer’s instructions. The protein concentration was determined by BCA Protein Assay (Pierce Biotechnology) and equal amount of total protein were loaded to sodium dodecyl sulfate-polyacrylamide gel electrophoresis gel for Western blotting analysis described previously.21 (link) The following primary antibodies were used in the analysis: anti-STARS (1:1,000; Abcam), anti-RhoA (1:2,000; Abcam), anti-SRF (1:1,000; Abcam), anti-histone H3 (1:1,000; Abcam), anti-glyceraldehyde 3-phosphate dehydrogenase (1:30,000; CST), and anti-β-tubulin (1:30,000; Sigma).
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