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Laser scanning confocal microscope

Manufactured by Nikon
Sourced in Japan, United States

The Laser Scanning Confocal Microscope is an optical imaging instrument that uses a focused laser beam to scan a sample point-by-point and construct a high-resolution, three-dimensional image. It provides improved contrast and clarity compared to traditional optical microscopes by eliminating out-of-focus light.

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376 protocols using laser scanning confocal microscope

1

Visualization of AtFDH1-GFP Localization in Arabidopsis

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The full-length sequence of AtFDH1 with native promoter was cloned into pMDC107 for GFP expression (AtFDH1-GFP). Stable Arabidopsis transgenic lines for the expression of AtFDH1-GFP were developed by floral dip transformation [48 (link)]. The localization of AtFDH1-GFP in epidermal cells was determined under the confocal laser scanning microscope (NIKON, Japan).
To observe the localization of AtFDH1, Arabidopsis wild-type Col-0 and AtFDH1-GFP expressing (under the control of AtFDH1 promoter) transgenic plants in Col-0 were grown in ½ MS media for four weeks, and AtFDH1-GFP expression in epidermal cells of Arabidopsis was visualized using a confocal laser scanning microscope (NIKON, Japan). The leaf tissues were floated with the bacterial suspension of host pathogen P. syringae pv. maculicola (1×106 CFU/ml) and nonhost pathogen P. syringae pv. tabaci (1×106 CFU/ml). After one hour inoculation, the leaf tissues were washed with distilled water, and localization of FDH1-GFP was observed. For wounding stress, the adaxial epidermal peels from wild-type Col-0 and AtFDH1-GFP expressing transgenic plants were prepared in the MES buffer (10 mM, pH 6.5), and localization of AtFDH1 was imaged under the confocal laser scanning microscope (NIKON, Japan).
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2

In Vivo and In Vitro Phagocytosis of MSCs-ApoEVs

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For in vivo phagocytosis experiment, CTX-induced TA injury was established as mentioned above while MSCs-ApoEVs were pre-stained by PKH26 (Sigma, USA) according to the manufacturer’s protocol. The PKH26 labeled MSCs-ApoEVs were injected into left TA muscles 3 days after TA injury models were established. The TA muscles were collected and fixed, dehydrated, and embedded in optimal cutting temperature compound (Leica, Germany) 24 h after PKH26 labeled MSCs-ApoEVs injection. For immunofluorescence staining, 10 μm sections were incubated with mouse anti-myosin antibody (R&D, MAB4470) at 1:250 dilution overnight at 4 °C and then incubated with Alexa Fluor 488 labeled secondary antibody (Yeasen, 33112ES60) at 1:500 dilution for 2 h at room temperature and finally stained with Hoechst 33342 (Invitrogen, H21492) for 10 min at room temperature, all operations are carried out in dark environments. The fluorescence images were captured by laser scanning confocal microscope (Nikon, Japan).
For in vitro phagocytosis experiment, PKH26 labeled MSCs-ApoEVs were added to C2C12 myoblasts and incubated for 3 h. After that, C2C12 myoblasts were fixed, permeated, and then stained by 488-conjugated phalloidin (AAT Bioquest, 23115) for 1 h and Hoechst 33342 for 5 min at room temperature. The fluorescence images were captured by laser scanning confocal microscope (Nikon, Japan).
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3

Histological and Immunostaining Analysis of Liver, Adipose, and Brain Tissues

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Hematoxylin and eosin (H&E) staining of liver and adipose tissues was performed according to the manufacturer’s instructions (BASO, Guangdong, China). The size of adipocytes was analyzed in H&E–stained sections with ImageJ software (National Institutes of Health). For immunohistochemistry analysis, sections were subjected to antigen retrieval and then blocked and incubated overnight at 4°C with primary antibodies (Supplementary Table 1). For oil red O staining of liver tissues, frozen sections were fixed and stained with 0.5% oil red O solution. Images were obtained with an optical microscope (Olympus, Tokyo, Japan) or a laser scanning confocal microscope (Nikon, Tokyo, Japan).
Immunofluorescence (IF) staining of brain tissues was performed as previously described (10 (link)). Briefly, free-floating sections were blocked for 1 h at room temperature, incubated with primary antibodies (Supplementary Table 1) at 4°C overnight, and then incubated with secondary antibodies at room temperature for 2 h. Images were obtained with laser scanning confocal microscope or fluorescence microscope (Nikon).
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4

Immunodetection of DNA Damage and HPV E7 Protein

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In order to further account for the editing, we assessed the expression of 53BP1, a marker for DNA damage42 (link) by immunocytochemical analysis18 (link). Thirty six hours after treatment, SiHa cells were washed with PBS and fixed in 4% PFA. Cells were permeabilized with acetone: methanol (1:1) for 20 minutes and blocked with 3% BSA for 1 hour followed by overnight incubation of anti-53BP1 (1:100, Cell signaling Cat# 4937). Cells were then washed with PBS followed by 1-hour incubation with anti-rabbit FITC (1:100, Sigma) and were counterstained with DAPI. Cells were then washed and mounted in 80% glycerol. Images were taken in confocal laser scanning microscope (Nikon).
To confirm E7 expression after TALEN-mediated gene editing post 72 hours after treatment, SiHa cells were washed with 1X PBS and fixed in 4% PFA. Cells were then permeabilized with acetone: methanol (1:1) for 20 minutes and blocked with 3% BSA for 1 hour followed by overnight incubation anti-E7 antibody (1:100, Cat# Sc6981). After washing three times with 1X PBS, the cells were incubated with secondary bodies in appropriate dilutions (1:400, anti-mouse FITC; Life technologies, Cat# A21200). The cells were counterstained with DAPI and mounted in 80% glycerol and sealed. Images were taken in confocal laser scanning microscope (Nikon).
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5

Immunofluorescence Imaging of PLAC8 Protein

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Cells were briefly seeded onto glass coverslips in 24-well plates up to 50–60% confluence. Cells were washed thrice and blocked in PBST (PBS containing 0.1% Tween) containing 2.5% bovine serum albumin (Sigma-Aldrich, St Louis, USA) at room temperature for 30 min. Cells were washed thrice and then incubated with PLAC8 antibody (1:200) at 37 °C for 1 h followed by Alexa 488-conjugated (green) goat anti-rabbit antibody (1:1000) (Multisciences, Hangzhou, China) to detect the target protein. DAPI was used to visualize the cell nuclei. Images were acquired using a Nikon laser scanning confocal microscope (Nikon Instruments Inc., Melville, NY, USA).
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6

TUNEL Apoptosis Assay for Cell Death Detection

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TUNEL apoptosis assays were performed with a KeyGEN Biotech kit (KGA7052, Jiangsu, China) according to the manufacturer's protocol. The cells were seeded into 6‐well plates and cultured for 24 hours. Following transfection for 48 hours, the cells were collected, and the cells or frozen slides of nude mice were blocked with 3% H2O2 in methanol. A sufficient volume of proteinase K was added to completely cover the cells or tissue, and the samples were incubated for 30 minutes in a humidified chamber at room temperature. After washing the slides three times with PBS for 5 minutes, 50 μL of TdT reaction buffer was added to each slide, and the slides were incubated for 1 hour at room temperature in the dark. The cells or slides were subsequently washed with PBS three times for 5 minutes each, after which 50μl of streptavidin‐FITC reaction buffer was added to each slide. The cells or slides were then incubated for 30 minutes at room temperature in the dark, and then, images were acquired using a Nikon laser scanning confocal microscope (Nikon Instruments Inc, Melville, NY, USA).
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7

In Situ Hybridization for Gene Expression Analysis

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The EU and EC tissues were embedded in paraffin and sliced. Slices were dewaxed in xylene, dehydrated in anhydrous ethanol, and then treated with protease K (20 µg/mL). Subsequently, 3% methanol-H2O2 was added to block endogenous peroxidase. After prehybridization, the hybridization solution with a digoxigenin (DIG) -labeled probe was added, and the sections were hybridized overnight at 42 °C. The sections were then incubated with mouse anti-digoxigenin-labeled peroxidase (anti-DIG-HRP; Jackson ImmunoResearch, West Grove, PA, USA) at 37 °C for 50 min. After washing three times, freshly prepared FITC-TSA chromogenic reagent (Servicebio, Wuhan, China) was added to the reaction in the dark for 5 min at room temperature, and then the sections were incubated with DAPI for 5 min. Finally, the slices were sealed and observed using a Nikon Laser Scanning Confocal Microscope (Nikon, Tokyo, Japan).
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8

Gadd45β Modulates Caco-2 Cell Proliferation

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Caco-2 cells were plated in an eight-chamber slide 2 days before the experiment. Thirty-six hours after transfection with an empty vector or a V5-tagged Gadd45β plasmid, cells were treated with 10% DSS for 24 h. Thereafter, the medium was replenished with or without TGF-β (10 ng/ml) for 24 h to establish the recovery phase. The cells were washed with PBS twice, fixed with 4% paraformaldehyde (PFA) for 20 min, permeabilized with methanol for 20 min at −20 °C and then blocked with 2% BSA for 1 h. The cells were then incubated with an anti-Ki-67 antibody (0.1 μg/ml) overnight at 4 °C and incubated at 37 °C for 1 h with an Alexa 488-conjugated goat anti-rabbit IgG antibody (Invitrogen) for 1 h. Nuclear DNA was stained with DAPI. A Nikon laser-scanning confocal microscope (Nikon Corporation, Tokyo, Japan) was used to capture images, which were analyzed using NIS-Elements software (Nikon Corporation, Tokyo, Japan).
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9

Gedunin and Hedgehog Pathway Modulation

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HPAC cells (1 × 104 cells/well) were seeded in 8-well chamber slides and treated after 24h with 25μM gedunin, 1μg/ml rhShh, 5μM GANT-61, 1μg/ml rhShh and 25μM gedunin, 5μM GANT-61 and 1μg/ml rhShh. Then 24h after incubation with the respective treatments the cells were fixed with 100% methanol and 100% acetone (ratio 1:1). Membrane permeabilization was done using 0.2% Triton X in PBS for 20 min and blocked with 5% BSA. Slides were then incubated with Shh (sc-9024) and Gli1 (sc-20687) antibodies (Santa Cruz Biotechnology, Santa Cruz, CA, USA) for 24h followed by Alexa fluor 488-conjugated anti–rabbit secondary antibody (Life Technologies, Grand Island, NY, USA). Images were captured by Nikon laser scanning confocal microscope.
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10

Fluorescent Protein Localization Assay

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Transfected RWPE-1 and CTPE cells were seeded on glass coverslips and allowed to attach and grow to 60% confluence as previously described [30 (link)]. Following treatment with vehicle or cadmium for 24 h, cells were washed and then incubated with Plac8 or LC3-B antibodies, followed by secondary antibodies conjugated to Alexa Fluor 488 (Green) to detect the localization and expression of the target proteins. The location of the antigen-antibody complexes were visualized using a Nikon laser scanning confocal microscope (Nikon Instruments Inc., Melville, NY).
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