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132 protocols using tcs sp2

1

Visualizing Air-Water Interface of Superhydrophobic Surfaces

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To investigate the shape of the air–water interface of the air layers kept by MSM and to proof the expected durability of the air layer in a water depth lower than 2 cm, a 2.0 × 2.0 cm2 sample was placed in a Petri dish filled with deionized water. In this first experiment, the air layer of the sample immersed at 0.5 cm depth, i.e., smaller than hmax, was visualized with a confocal laser scanning microscope (CLSM, TCS SP II, Leica Microsystems, Wetzlar) using an objective lens (HCX APO L 63x/0.90 W U-V-I, Leica Microsystems, Wetzlar) with 63-fold magnification directly after submergence and after two weeks. Using the total reflection of the laser light at the air–water interface this method allowed us to analyze the shape of the air–water interface at high resolution. The method as well as the results are shown in Figure 2. For the analysis of the shape of the air–water interface, cross sections trough the image stacks have been generated by using the software Leica TFS.
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2

Immunohistochemical Analysis of FeSUT1 in Plants

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The plant tissue was immersed in fixative (75% (v/v) ethanol p.A., 25% (v/v) glacial acidic acid) for 90min at 4°C. Embedding was carried out as described earlier (Stadler and Sauer, 1996 ; Schmitt et al., 2008 (link)). All immunohistochemical analyses were performed with purified Anti-FeSUT1 antiserum (diluted 1:4 in blocking buffer). Anti-rabbit IgG Alexa Fluor®488 (Thermo Fischer Scientific, Waltham, MA, USA) was used as secondary antibody. Callose was stained with 0.1% aniline blue (Water Blue; Fluka, Buchs, Switzerland) in TBS for 5min. Aniline blue fluorescence was detected with an excitation light of 365nm using a conventional fluorescence microscope (Axioskop; Carl Zeiss, Jena, Germany). Overlay images of Alexa Fluor®488 and aniline blue fluorescence were created using the Adobe Photoshop CS6 software. All other fluorescence and phase-contrast images were created at the confocal laser microscopes TCS SPII and TCS SP5 (Leica Microsystems, Wetzlar, Germany).
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3

EU-Labeling and Imaging of Oocytes

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Oocytes were labeled for 1 h in 100 µl 199-1 containing 1 mM 5-ethynyl uridine (EU). All the procedures for EU detection were conducted at room temperature in accordance with the manufacturer’s protocols (Invitrogen; Click-iT RNA imaging kits). After EU labeling, oocytes were (1) fixed with 3.7% formaldehyde in PBS for 40 min, (2) permeabilized with 0.1% Triton X-100 for 30 min, (3) stained in the dark for 30 min with 100 mM Tris (pH 8.5)/1 mM CuSO4/10–50 µM fluorescent azide/100 mM ascorbic acid, (4) washed with Click-iT® reaction rinse buffer, (5) stained with Hoechst 33342 and (6) mounted on glass slides and observed with a Leica laser scanning confocal microscope (TCS SP2; Leica Microsystems). Blue diode (405 nm) and argon (Ar; 488 nm) lasers were used to excite Hoechst and FITC, respectively. Fluorescence of Hoechst and FITC were detected with 420–480 nm and 505–540 nm bandpass emission filters, respectively.
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4

EdU Labeling of Proliferating HepG2 Cells

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Following the instructions provided with the EdU labelling/detection kit (RiboBio, Guangzhou, China), HepG2 cells were incubated in a final volume of 2 mL of complete medium at 2.5 × 105 cells per well on a glass-bottom dish. Following incubation for 18 h, the medium above the cells was discarded and replaced with fresh medium containing PB at different concentrations (2.5 μM, 5 μM and 10 μM) or DMSO (<0.1%) as the vehicle. Twenty hours later, 100 μL of fresh medium containing of 50 μM EdU labelling agent was added to the cell cultures, which were then incubated for another 8 h at 37 °C under a 5% CO2 atmosphere. Then, cells were incubated with glycine for 5 min after being fixed with 4% paraformaldehyde (pH 7.4) for 30 min. After being washed with PBS, the cells were stained with the anti-EdU working solution at room temperature for 30 min. Following a wash with 0.5% Triton X-100 in PBS, the cells were incubated with 5 μg/ml of Hoechst 33342 at room temperature for 30 min, and then, HepG2 cells were followed by observing them under a confocal laser scanning microscope (TCS SP2, Leica Microsystems, Germany; LSM710, Carl Zeiss, Germany).
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5

Apoptotic Nuclei Visualization via Hoechst Staining

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Staining with Hoechst 33,258 (1,1'-dioctadecyl-3, 3, 3',3'-tetramethylindocarbocyanine) was used to observe apoptotic nuclei in a similar procedure as described above. Cells were stained with Hoechst 33,258 staining solution according to the manufacturer's instructions provided with Apoptosis, Hoechst Staining Kit. Stained nuclei were assessed under a laser scanning confocal microscope (TCS-SP2, Leica Microsystems, Heidelberg, Germany).
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6

Quantifying Immune Cell Markers in Tissue Sections

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To quantify cells of interest in immunostained sections, we obtained images of the stained sections by fluorescence microscopy (model TCS SP2; Leica Microsystems). Three slices per mouse and three fields from each slice were used for quantification; we manually outlined the cells and quantified them using the ImageJ software. The threshold values were maintained at a constant level for all analyses using the ImageJ software. ED1-positive, pSTAT3-positive, IBA1-positive, and NICD-positive areas were divided by the area of the image and are expressed as percentages. The number of NeuN-positive cells and activated caspase 3-positive cells was manually counted at × 400 magnification. The average number of activated caspase 3-positive cells expressing NeuN in these images was quantified.
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7

Immunofluorescence Analysis of pSTAT3 and Nrf-2

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pSTAT3 and Nrf-2 immunofluorescence were performed using primary antibodies such as rabbit anti-phospho-STAT3 (Tyr705) (Cell Signalling Technology, Boston, MA, USA) and mouse anti-Nrf-2 (Abcam, Cambidge, UK), respectively. The secondary antibodies for pSTAT3 and Nrf-2 were goat anti-rabbit 488 (Alexa Fluor) and donkey anti-mouse 546 (Alexa Fluor), respectively. DAPI counterstained the cell nuclei. Images of pSTAT3- and Nrf-2-immunolabelled specimens (40 ×) were taken by the confocal laser scanning microscope (TCS-SP2; Leica Microsystem GmbH, Wezlar, Germany). Immunofluorescence was performed 24, 48 and 72 h after treatment. However, given that no significant differences were observed among the three time points, only the results at 24 h are discussed.
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8

Baicalein-Induced Apoptosis Imaging

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C33A cells treated by 200 µM baicalein for 24 h were stained using the ApopTag Fluorescein In Situ Apoptosis Detection kit (Chemicon International, Inc., Temecula, CA, USA), and apoptosis was observed using confocal laser scanning microscopy (TCS SP2; Leica Microsystems GmbH, Wetzlar, Germany).
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9

Visualizing MC3T3-E1 Cell Spreading

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Cell spreading was investigated by detecting the filamentous actin of the cytoskeleton of MC3T3-E1 cells. After 24 hours of incubation, the samples were washed gently three times with PBS to remove the unattached cells. Then the cells on the samples were fixed with 4% paraformaldehyde for 15 minutes at room temperature and permeabilized with 0.1% Triton X-100 in PBS for 10 minutes. After washing three times with PBS, the cells were stained with rhodamine-phalloidin (5 units·mL−1; Biotium, Hayward, CA, USA) for 30 minutes and then washed three times with PBS. The cytoskeleton was visualized by confocal laser scanning microscopy using a Leica Microsystems TCS SP2 (Heidelberg, Germany).
Cell spreading was also observed with SEM. After 24 hours, the cells on the samples were fixed with 2.5% glutaraldehyde for 15 minutes before being washed gently three times with PBS. Then the cells were dehydrated with gradient ethanol (30%, 50%, 70%, 90%, 100%, and 100% for 10 minutes each time). Finally, all the samples were air-dried at room temperature, sputter-coated with gold, and observed with SEM.
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10

Primary Mouse Lung Fibroblast Migration Assay

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This assay was performed with an Oris cell migration assay kit (Platypus Technologies, Fitchburg, WI, USA) according to the manufacturer’s instructions. Briefly, primary mouse lung fibroblasts were seeded (2.5 × 104 cells/well) in an Oris Pro Cell Migration Assay 96-well tissue culture-treated plate. Two hours later, once the cells were adhered to the plates, the plate was incubated for an additional 12 h to allow cells to migrate. The wells were then washed with PBS and fixed with 4% paraformaldehyde (PF) for 15 min. After being washed 3 times, the wells were incubated with CoraLit® 594-phalloidin for 2 h at room temperature. Images were captured with a confocal microscope (TCS SP2, Leica Microsystems, Heidelberg, GmbH) utilizing a 4× objective.
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