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43 protocols using mrfp gfp lc3 adenovirus

1

Autophagy Visualization in AGS Cells

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AGS cells treated at different pH (6.5 and 7.4) were seeded on coverslips and grown to reach 50% confluence. They were then infected with mRFP-GFP-LC3 adenoviruses (HanBio, shanghai) according to the manufacturer’s guidelines. The medium was replaced with different pH medium after 24 h. Cells were then fixed with 4% paraformaldehyde. The fixed cells were treated with 5% BSA for 30 min and stained with DAPI (Solarbio, Tongzhou Dist. Beijing) for 6 min. The coverslips were then observed by laser confocal microscopy (×189 magnification), as described previously (25 (link)). We counted the number of mRFP-GFP-LC3 puncta in three independent visual fields and analyzed the results using Image J software.
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2

Autophagic Flux Quantification in Cardiomyocytes

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Cardiomyocytes were incubated in confocal dishes with the culture medium containing mRFP-GFP-LC3 adenoviruses (Hanbio, China) at 50 MOI for 2 hours. 24 hours later, the transfection medium was replaced. The cells were then cultivated in FBS-free low-glucose DMEM with hypoxia for subsequent experiments. The dots representing autophagy were measured using a confocal microscope (NIKON, Tokyo, Japan). Quantifying RFP, GFP, and merged points (dots/cell) were used to evaluate autophagic flux.
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3

Apoptosis and Autophagy Evaluation Protocol

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MTT was obtained from HXBIO. Hoechst 33342 was purchased from Invitrogen; Thermo Fisher Scientific, Inc. Annexin V-FITC/PI apoptosis kit was purchased from BD Pharmingen™. The mRFP-GFP-LC3 adenoviruses were purchased from Hanbio Biotechnology Co. Ltd. Chloroquine (CQ) was purchased from MedChemExpress. Rapamycin (Rap) was purchased from Sigma-Aldrich; Merck KGaA. Antibodies against PARP (cat. no. 9542; polyclonal), cleaved-PARP (cat. no. 5625; polyclonal), total PARP (cat. no. 9532; polyclonal), pro-caspase-3 (cat. no. 9665; monoclonal), p62 (cat. no. 8025; polyclonal) and a secondary anti-rabbit antibody (cat. no. 7074) were purchased from Cell Signaling Technology, Inc. Bcl-2 (cat. no. db176; polyclonal), LC3 (cat. no. db760; polyclonal) and β-actin (cat. no. db10001; polyclonal) antibodies were purchased from Beijing Jiachenhong Bio-Technology Co., Ltd. A bicinchoninic acid (BCA) protein assay kit was purchased from Thermo Fisher Scientific, Inc. Clarity Western™ ECL Substrate was purchased from Bio-Rad Laboratories, Inc.
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4

Autophagic Flux Analysis in Podocytes

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Autophagy flux was analyzed based on the distribution and alteration of mRFP-GFP-LC3 fluorescence signals under fluorescence microscopy. mRFP-GFP-LC3 adenoviruses were provided by Hanbio Biotechnology Co., Ltd (Shanghai, China). Podocytes were inoculated with mRFP-GFP-LC3 adenoviruses for 24 h. The cells were washed with PBS, fixed with 4% paraformaldehyde for 10 min, and permeabilized with 0.5% Triton X-100 (Sigma-Aldrich) for 10 min. After that, the cells were stained with DAPI (Sigma-Aldrich) for 6 min. After the designated treatments, the cells were fixed with 4% paraformaldehyde and examined under fluorescence microscopy (Olympus, Tokyo, Japan). The number of mRFP, GFP, and GFP-mRFP dots were counted in five microscopic fields.
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5

Neuroprotective Mechanisms of NQO2 Regulation

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Sodium fluoride (NaF, S7920), menadione (47775), 4,6‐diamidino‐2‐phenylindole dihydrochloride (DAPI) (28718‐90‐3) and S29434 (MCE, HY‐122614) (Sigma Aldrich); anti‐NQO2 antibody (GR257660‐8) (Santa Cruze); anti‐p‐mTOR (39321), ‐LC3A/B (7074) and ‐rabbit IgG (12741) antibodies (Cell Signaling Technology, Inc.); anti‐autophagy‐related protein 5 (ATG5) (GR3195291‐10), −p62 (GR124843‐69) and ‐GAPDH antibodies (Abcam); mRFP‐GFP‐LC3 adenovirus (Hanbio Biotechnology Co., Ltd.); packaging plasmid system (GV115, Helper 2.0) (Genechem Co., Ltd.); and all other general chemicals (Sigma Aldrich) were purchased from the sources indicated.
Neuroblastoma SH‐SY5Y cells were purchased from the Conservation Genetics CAS Kunming Cell Bank, China. Sprague–Dawley (SD) rats (4 weeks old, initial weight 90–100 g) were purchased from Liaoning Changsheng Biotechnology Co., LTD, China under the license SCXK (Liao)‐2020‐0001.
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6

Visualizing Autophagic Flux in Cells

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Autophagic flux was tracked by mRFP–GFP–LC3 adenovirus (Hanbio, Shanghai, China). Forty-eight hours after adenovirus infection, the cells expressed LC3 protein labeled with mRFP–GFP. Yellow puncta (mRFP+ and GFP +) correspond to the presence of autophagosomes, and red puncta (mRFP+ and GFP) indicate autolysosomes. Red LC3 puncta accumulation was quantified to evaluate autophagic flux. After steroid starvation for 48 h in phenol red-free medium containing 10% charcoal stripped-FBS, the cells were cultured with 0, 1 or 10 nM DHT for 3 days and then imaged under a Leica DMi8 fluorescence microscope. At least 16 cells in each group were analyzed.
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7

Autophagic Flux Visualization

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Cells were seeded into 6-well plates and loaded mRFP-GFP-LC3 adenovirus (Hanbio Biotechnology, China) with a MOI (multiplicity of infection) of 50. Then, cells were treated with indicated treatments as described in figure legends. Fluorescent images were obtained with a Leica TCSSP5 laser scanning confocal microscope equipped with a 40-times objective lens. Confocal microscopy images were binarized to black and white images by using ImageJ software to quantify the number of autophagosome (yellow) and autolysosome (red) puncta per cell.
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8

Autophagy Flux Assay with mRFP-GFP-LC3

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Cells were plated in a 24-well plate, transfected with mRFP-GFP-LC3 adenovirus (HanBio Technology, Shanghai, China) for 4 h, incubated with ARCSP for 48 h and observed under a confocal microscope (Zeiss, LSM880). mRFP was used to label and track LC3. Attenuation of GFP expression indicated that lysosomes had fused with autophagosomes to form autophagolysosomes, and GFP was quenched due a change in the pH, at which point only red fluorescence was detected. After microscopic imaging, the red and green fluorescence images were merged; the yellow puncta were considered autophagosomes (RFP+GFP+), and the red puncta were considered autophagolysosomes (RFP+GFP). The intensity of autophagy flux was assessed by counting the number of yellow and red puncta. ARCSP treatment increased the numbers of yellow and red puncta, indicating that it increased autophagic flux; when the number of yellow puncta but not red puncta increased in the cells or when the numbers of yellow and red puncta decreased in the cells, autophagic flux was blocked.
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9

Evaluating Autophagy in Cell and Animal Models

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In vitro study, cell autophagy was determined by western blot (WB) assays and immunofluorescence (IF). WB was performed to detect the protein abundance of ATG5, ATG7, ATG16L, LC3 I/II, P53 and SQSTM1. Immunofluorescence of LC3II and beclin1was used to evaluate the level of autophagy.
In vivo study, we used mRFP-GFP-LC3 adenovirus associated virus (AAV) (32060804, HanBio-Technology; Shanghai, China) to show the kinetics of autophagic flux. AAV was intravenously injected, according to the manufacturer’s instructions. LC3 puncta were examined by fluorescence microscopy (Olympus BX61; Japan). At the same time, autophagy markers were tested by WB assays via protein extracted from renal allograft or endothelial cells.
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10

Detecting Autophagic Flux in GC Cells

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GC cells were transfected with an mRFP-GFP-LC3 adenovirus (HanBio, Shanghai, China) to detect autophagosomes and autolysosomes. After transfection for 6 h, the cells were treated with 5-FU or a combination of MLT and 5-FU. Autophagic flux was estimated by visualizing the cells using a fluorescence microscope 32 (link),33 (link).
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