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47 protocols using hoechst 33342

1

Chondrocyte Proliferation Evaluation via EdU Staining

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EdU staining was performed to evaluate chondrocyte proliferation. Briefly, 5 × 103 chondrocytes were inoculated in 96-well plates. After 24 h, the drug-loaded nanoparticles together with the cartilage cells were added and the mixture was incubated at 37 °C for another 24 h, followed by the addition of EdU dye. After 2 h, the medium was discarded, and the cells were fixed with 4% polyformaldehyde solution. In the next step, Apollo reaction solution and Hoechst 33342 (Ribobio, Guangzhou, China) were added to the plates in the dark. After 30 min, the cells were washed with PBS and images were captured using an inverted fluorescence microscope (ZEISS, Germany).
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EdU Proliferation Assay Protocol

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Cells were inoculated in a 96‐well plate at a density of 1.6 × 105 cells/well and cultured for 48 hours. After culture, EdU assay was performed in accordance with the protocols of EdU kits (C10310; Guangzhou RiboBio Co., Ltd.). Cells in each well were cultured with 100 μL of 50 μmol/L EdU at 37°C for 4 hours, fixed with 4% formaldehyde at room temperature for 15 minutes and treated with 0.5% Triton X‐100 at room temperature for 20 minutes for permeabilization. After that, cells in each well were incubated with 100 μL of Apollo® compound (C10338‐2; RiboBio Company) at room temperature for 30 minutes, stained using 100 μL of hoechst33342 (Ribobio Company) for 30 minutes and observed under a fluorescence microscope (Olympus). The number of EdU positive cells (red blood cells) was calculated using the Image‐Pro Plus 6.0 software (Media Cybernetics).17
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Cell Proliferation Assay with EdU Incorporation

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Ten thousand cells were transfected and placed in 24-well plates (Corning, USA). The number of cells was determined every other day with a hemocytometer under an inverted-light microscope.
We also performed the 5-ethynyl-20-deoxyuridine-Apollo 488 (EdU-Apollo 488) incorporation assay to assess the cell proliferation capacity. CCA cells were seeded into 96-well plates at a density of 3×104 cells/ml and 24 h later, cells were transfected with 20 nM of NSM or 23b-3pM for 6 h. The cells were stained with EdU and Hoechst 33342 separately from a kit from RiboBio, according to the manufacturer's instructions. The proliferating cells were checked under the fluorescence microscope and the cell proliferation rate calculated by the formula: (number of proliferating cells/total cells) × 100%.
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Schwann Cell Proliferation Assay

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The assay of cell proliferation was performed with Cell-Light Apollo567 In Vitro Kit (RiboBio, Guangzhou, China). Complete medium was used to re-suspend the Schwann cells that were then tallied and plated on 96-well poly-L-lysine-coated plates. EdU was applied and the cells were cultured after cell transfection. The cells were fixed with phosphate buffered saline containing 4% formaldehyde and stained with Apollo 567 (RiboBio, Guangzhou, China) and Hoechst 33342 (RiboBio). Schwann cell proliferation analysis was performed using randomly selected images through a fluorescence microscope (Leica, Mannheim, Germany). The proliferating cell numbers were calculated. The average number of proliferating cells in the control group was set as 100%. The cell proliferation rate of p-GV230-Claudin-15 group was obtained by dividing by the average number of proliferating cells in the negative control or pGV230 group. The results were presented as fold change.
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5

Cell Proliferation Assay for SPC-A1 Cells

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In total, 1×105 SPC-A1 cells were cultured on coverslips in triplicate in 24-well plates and treated with 0, 2.5, 5 or 10 µM #2714 for 48 h as aforementioned. Cell proliferation was determined using an EdU incorporation assay kit, in which Hoechst 33342 was included (Guangzhou RiboBio Co., Ltd.) according to the manufacturer's protocol. Briefly, following treatment with #2714, cells were incubated with 500 µl EdU solution (50 µM) diluted with completed medium at 37°C in darkness for 2 h, then fixed with 4% paraformaldehyde at room temperature for 30 min and stained with 500 µl Hoechst 33342 solution at room temperature in darkness for a further 30 min. The percentage of proliferating cells was determined using an inverted fluorescence microscope (magnification, ×40; Zeiss AG, Oberkochen, Germany).
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6

Cell Proliferation Assay Using EdU Incorporation

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Cells were seeded in 96-well plates at a density of 1.5 × 103 cells per well, incubated for 16 h and then treated by direct addition of oligonucleotides to the culture medium at a final concentration of 18 μM (untreated samples were supplemented with an equal volume of PBS). At 72 h post-treatment, cell counts were determined using the 5-ethynyl-2′-deoxyuridine (EdU) incorporation assay (Ribobio). Cells were exposed to 50 μM EdU for 2 h at 37 °C, then fixed in 4% formaldehyde for 30 min at room temperature, and then permeabilized in 0.5% Triton X-100 for 10 min. Cells were washed with PBS, and each well was incubated with 100 μL of 1 × Apollo® reaction cocktail (Ribobio) for 30 min. DNA was then stained with 5 μg/ml Hoechst 33342 (50 μL per well, Ribobio) for 30 min and visualized under a fluorescence microscope (Olympus IX81).
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7

EdU Labeling of Dividing Cells in Fish

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After the 8-week sampling period, 10 mg of EdU (RiboBio, Guangzhou, China) was dissolved with phosphate buffered saline (PBS) solution to make a 1 mg/mL stock solution. This dose is based on a study in mice (100 μg/g body weight; Guo et al., 2009 (link)). The DI of 10 fish from each group were harvested at 12 h after intraperitoneal injection and fixed with 4% paraformaldehyde for 24 h (Guo et al., 2009 (link)). Then, Apollo buffer (RiboBio) was used to incubate all fixed DI samples for 30 min away from light. These samples were washed with 0.5% TrixtonX-100 solution for 10 min, and then stained with Hoechst 33342 (RiboBio) for 30 min away from light. Images of these DI samples were captured using fluorescent microscopy (Nikon Eclipse Ci, Japan).
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8

Cell Proliferation Assays: CCK-8 and EdU

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Cell Counting Kit-8 (CCK-8) and EdU assays were performed to measure cell proliferation. HASMCs were seeded into 96-well plates (2–3×103 cells/well). Cells were incubated at 37°C in serum-free DMEM with or without 20 ng/ml PDGF-BB (R&D Systems, Inc., Minneapolis, MN, USA) for 24 h following transfection. For the CCK-8 (Dojindo Molecular Technologies, Inc., Kumamoto, Japan) assay, 10 µl CCK-8 solution was added to each well, and the absorbance was measured at 450 nm following 3 h of incubation at 37°C.
For the EdU (Guangzhou RiboBio Co., Ltd.) assay, the cells were incubated at 37°C in EdU solution (50 nmol/l) for 2 h, and fixed at room temperature in 4% formaldehyde for 30 min. The cells were subsequently exposed to 1,000 µl Cell-Light™ EdU Apollo®488 In Vitro Imaging kit (100T) (938 µl dH2O, 50 µl reaction buffer, 10 µl catalyst solution, 3 µl fluorescent dye solution, 9 mg buffer additive) for 30 min, followed by nuclear staining at room temperature with Hoechst 33,342 for 30 min (all Guangzhou RiboBio Co., Ltd.). An inverted fluorescence microscope was used to capture and analyze the images (magnification, ×100; Axio Observer Z1).
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9

Quantifying Schwann Cell Proliferation

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Schwann cells were seeded onto 96-well culture plates at a density of 2 × 105 cells/mL and exposed to 50 μM 5-ethynyl-2′-deoxyuridine (EdU) using Cell-LightTM EdU Apollo567 In Vitro Kit (Ribobio). At 24 hours after EdU exposure, Schwann cells were fixed with 4% paraformaldehyde and stained with Apollo dye solution and Hoechst 33342 (Ribobio). Images were obtained using a DMR fluorescence microscope (Leica Model DMi8, Leica Microsystems CMS GmbH, Bensheim, Germany). Number of proliferating cells and total cells were quantified using ImageJ (v1.8.0.112) (National Institutes of Health, Bethesda, MD, USA) (Schneider et al., 2012).
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10

EdU Incorporation Assay in HUVECs

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HUVECs were incubated with 50 mM EdU (RiboBioInc) for 2 h and fixed with 4% paraformaldehyde for 60 min. Cells were permeabilized using 0.5% Triton X-100 for 10 min and then stained with Apollo (RiboBio, Inc.) for 40 min and Hoechst33342 (1:100; RiboBio Inc.) for 30 min. Cells were washed gently with PBS between each step.
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