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9 protocols using p 1000 pipette puller

1

Fluorescent Tracer Injection in 5xFAD Mice

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5xFAD mice and control mice (C57BL/6 x SJL) were injected twenty days before imaging, EGFP- LC3 lentivirus (titer: 5.0 × 106 vector genomes/ml, 5 μl) was injected into the retrosplenial dysgranular cortex (RSD, anteroposterior, −2.0 mm and mediolateral, 0.6 mm from bregma; depth, 1 mm), and the cerebellum cortex (anteroposterior, −7.0 mm and mediolateral, 1.2 mm from bregma; depth, 0.5 mm) of mice under anesthesia with 1.5% isoflurane. Human carboxytetramethylrhodamine (TAMRA)-β-amyloid 1–42, (100 μM, diluted by ACSF, DMSO, 0.1%; 1 μl) was injected into the RSD of mice under anesthesia with 1.5% isoflurane one day before imaging. Virus was delivered via a glass micropipette of 20–50 μm tip diameter made by capillary puller (P-1000 Pipette Puller, Sutter Instrument) under the conditions Heat at 741, pull power at 150, Velocity at 75, Delay at 1000 and Pressure at 400. 5 ul of viral solution was injected at the speed of 1 μl/min into RSD with an injection machine (FemtoJet®, eppendorf).
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2

Patch Clamp Recordings from Hippocampal CA1 Cells

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Whole-cell patch clamp recordings from hippocampal CA1 principal cells were performed using patch pipettes (2–4 MΩ) pulled from borosilicate glass (8250 1.65/1.0 mm) on a Sutter P-1000 pipette puller and were filled with intracellular recording solution that contained a Cesium-based recording solution [(in mM): CsMeSO4 120, NaCl 8, Mg-ATP 2, Na-GTP 0.1, HEPES 10, Cs-BAPTA 10, QX-314 Chloride 10]. Currents were measured with a Model 2400 patch clamp amplifier (A-M Systems, Port Angeles, WA) and converted into a digital signal by a PCI-6040 E A/D board (National instruments, Austin, TX). The Schaffer collateral fibers were electrically stimulated by providing a single electrical pulse (100 μs pulse width), delivered via a bipolar platinum–iridium stimulating electrodes (approx. 100 kΩ, FHC Inc., Bowdoin, ME, United States) placed approximately 50 μm from the soma. All voltage clamp experiments where the access resistance changed by more than approximately 20% were discarded. WCP Strathclyde Software was used to store and analyze membrane potential and current responses on a PC computer (courtesy of Dr. J Dempster, Strathclyde University, Glasgow, Scotland).
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3

Patch-clamp Recording of Granule Cells

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Each slice was transferred to a RC-26 recording chamber (Warner Instruments, Hamden, CT, USA) and continuously perfused with 95% O2/5% CO2-equilibrated standard ACSF (2.5 ml/min) at room temperature. Slices were visualized with an Olympus BX51WI fluorescence microscope (Olympus, Tokyo, Japan), equipped with the far infrared-differential interference contrast (DIC) optics, a charge-coupled device camera (Qimaging, Surrey, BC, Canada), and a 40X water-immersion objective. After a GFP-positive granule cell was fluorescently identified, the cell was switched to DIC visualization and patch-recorded. Patch electrodes were pulled from borosilicate glass (OD 1.5 mm, ID 1.1 mm) using a P97 or P1000 pipette puller (Sutter Instruments, Novato, CA, USA). The tip resistance was 6–9 MΩ. Electrical signals were recorded with an Axopatch 700B amplifier equipped with a 1440A Digidata (Molecular Devices, Sunnyvale, CA, USA). Data were filtered at 2 kHz, digitized at 5 kHz, and stored using pCLAMP software (Molecular Devices, Sunnyvale, CA). Parameters recorded were spontaneous and evoked firing and miniature post-synaptic currents.
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4

Biocompatible Quantum Dots and Peptides for Cell Signaling Studies

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A431 cells (CRL-1555) and HeLa cells (CCL-2) were purchased from the American Type Culture Collection. Dulbecco’s modified Eagle’s medium (DMEM; 10-014-CV), Eagle’s minimum essential medium (EMEM; 10-010-CV), phosphate-buffered saline (PBS; 21-014-CV), Dulbecco’s PBS (DPBS; 21-030 and 21-031), 0.25% trypsin/0.53 mM EDTA, and 0.25% trypsin/2.21 mM EDTA were purchased from Corning CellGro. MEM nonessential amino acids (11140), DMEM (no phenol red, 21063), and Hepes (15630-080) were purchased from Gibco. Micropipette preparation glass-bottom culture dishes (P50G-0-14-F) were purchased from MatTek Corporation. XenoWorks Microinjection Systems, P-1000 pipette puller, and borosilicate glass tubes (BF100-78-10) were used for microinjections (Sutter Instrument). Cetuximab and matuzumab antibodies were from Merck. VHH nanobodies binding to EGFR (EgA1 and EgB4) were produced as described elsewhere (57 (link)). Peptides: CPP, R9GGLAAibSGWKH6; Tb-pep, TbL4-GSGAAAGLS-H6; AF-peptide, AF-CSTRIDEANQAATSLP7SH6). QDs emitting at 625 nm were the same as described previously (36 (link)–38 (link), 45 (link)). These were made biocompatible by cap exchange with dihydrolipoic acid–modified compact ligand 4 (DHLA-CL4) or DHLA-PEG-methoxy (36 (link), 44 ). See fig. S7 for ligand structures. Lumi4-Tb reagents were provided by Lumiphore Inc.
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5

Miniature Excitatory Postsynaptic Current Recording

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A pipette internal solution comprised of (mM): 140 KCH3OSO3, 5 KCl, 0.5 EGTA, 1 MgCl2, 10 HEPES, 5 MgATP, 0.25 NaGTP, ~292 mOsm, ECl = −78.8 mV was used. Pipettes 4–6 MΩ in resistance were pulled from borosilicate glass capillaries (World Precision Instruments, 1B150F-4) on a Sutter Instruments P-1000 pipette puller. Voltage-clamp traces 5 min in duration were recorded at a holding potential of −70 mV in the presence of 1 μM tetrodotoxin (Tocris). All recordings were conducted with access resistance of <20 MΩ, leak current of <100 pA, and an applied series resistance compensation of 80%. Cells that did not maintain these parameters for the duration of the recording were eliminated. Analysis of mEPSCs was performed using pCLAMP10 (Axon Instruments, Molecular Devices) using a variable-amplitude template method, generated from a stable recording of at least 50 mEPSC events. Each trace was first low-pass filtered at 1 kHz, and negative-going mEPSCs were detected using a template match threshold of 4, without fitting.
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6

Miniature Inhibitory Postsynaptic Current Recording

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In order to record mIPSCs while maintaining a hyperpolarized membrane voltage, a high-chloride pipette internal solution (comprised of (mM): 100 CsCH3O3S, 50 CsCl, 10 HEPES, 0.2 BAPTA, 3 KCl, 1 MgCl2, 0.25 GTP-Tris, 2.5 creatine phosphate disodium, 2 MgATP, ~296 mOsm, ECl = −23.7 mV) was used. Pipettes 4–6 MΩ in resistance were pulled from borosilicate glass capillaries (World Precision Instruments, 1B150F-4) on a Sutter Instruments P-1000 pipette puller. Voltage-clamp traces 3 min in duration were recorded at a holding potential of −70 mV in the presence of 1 μM tetrodotoxin (Tocris) and 2 mM kynurenic acid (Sigma Aldrich). All recordings were conducted with access resistance of <20 MΩ, leak current of <100 pA, and an applied series resistance compensation of 80%. Cells that did not maintain these parameters for the duration of the recording were eliminated. Analysis of mIPSCs was performed using pCLAMP10 (Axon Instruments, Molecular Devices) using a variable-amplitude template method, generated from a stable recording of at least 50 mIPSC events. Each trace was first low-pass filtered at 1 kHz, and negative-going mIPSCs were detected using a template match threshold of 4, without fitting.
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7

Whole-Cell Patch-Clamp Recording of NMDAR-Mediated Currents

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A Nikon FN-1 microscope (Nikon, Tokyo, Japan) with a differential interference contrast optics and a video camera (Grasshopper 3 GS3-U3-23S6M-C; FLIR Integrated Imaging Solutions Inc., Wilsonville, OR, USA) was used to visualize the pyramidal neurons of CA1 hippocampus. Borosilicate glass pipettes (3–5 MΩ) were manufactured using a P-1000 pipette puller (Sutter Instrument, Novato, CA, USA). The pipette solution had the following composition: Cs-methanesulfonate—127 mM, HEPES—10 mM, NaCl—10 mM, EGTA—5 mM, QX314—6 mM, ATP-Mg—4 mM, and GTP—0.3 mM with pH adjusted to 7.25 by adding CsOH. The EPC 10 USB Double (HEKA Elektronik GmbH, Reutlingen, Germany) patch-clamp amplifier controlled with the HEKA Patchmaster software was used for the whole-cell patch-clamp recordings. The access resistance was typically 10–20 MΩ during the experiment.
The type of and the positioning of the stimulating electrode were the same as for the field potential recording. NMDAR-mediated currents were isolated by adding gabazine (10 µM, Alamone Laboratories, Jerusalem, Israel) and DNQX (10 µM, Tocris Bioscience, Bristol, UK) to the recording solution. The NMDAR-mediated eEPSCs were induced by the TBS protocol with the stimulus current strength set to 300–500 µA and recorded at −30 mV. The data were lowpass-filtered at 5 kHz and digitized at 40 kHz.
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8

Nanoelectrospray Ionization Protocol

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In
these experiments, LESA microextraction was followed by sample
collection in a well plate. The sample was then loaded into a gold-coated
borosilicate nanoelectrospray emitter, i.e., the LESA sampling and
ionization processes were decoupled. These experiments are referred
to as “nanoESI” throughout this Article. Details of
the microextraction are given in the Supporting Information.
Borosilicate glass capillaries were prepared
in house using a P-1000 pipette puller (Sutter Instrument) before
coating with gold using a sputter coater (Agar Scientific Ltd.).
Sample-loaded tips were inserted into a nanospray ion source equipped
with the static spray option (Thermo) attached to either of the mass
spectrometers described below. The electrospray voltage for the tips
was typically in the range of 1.0–1.2 kV and performed with
no additional backing pressure. The use of borosilicate emitters improved
nanoelectrospray stability, duration, and signal intensity when compared
with that of chip-based nanoESI. This observation can be attributed
to the narrower spray orifice (1–2 μm) and the tapered
geometry of the borosilicate emitter versus the square-cut geometry
of the chip-based nanoESI emitters.33 (link)
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9

Thalamic RE Neuron Patch Clamp Recordings

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Whole cell patch clamp recordings from thalamic RE neurons were performed using patch pipettes (2 – 4 MΩ) pulled from borosilicate glass (8250 1.65/1.0 mm) on a Sutter P-1000 pipette puller and were filled with intracellular recording solution that contained (in mM): KMeSO4 145, NaCl 8, Mg-ATP 2, Na-GTP 0.1, HEPES 10, EGTA 0.1. Membrane potentials and/or currents were measured with a Model 2400 patch clamp amplifier (A-M Systems, Port Angeles, WA) and converted into a digital signal by a PCI-6040E A/D board (National instruments, Austin, TX). All voltage clamp experiments where the access resistance changed by more than approximately 20% were discarded. WCP Strathclyde Software was used to store and analyze membrane potential and current responses on a PC computer (courtesy of Dr. J Dempster, Strathclyde University, Glasgow, Scotland). The calculated junction potential (~10 mV) was not compensated for in the analysis.
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