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8 protocols using a4782

1

Immunoblotting of Cancer Signaling Proteins

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Immunoblotting was performed as described previously (48 (link)). The following primary antibodies were used: anti-BRD4 antibody (A301-985A100, Bethyl Laboratories), anti-RET antibody (ab134100, Abcam), anti-RET (phospho Y1015) antibody (ab74154, Abcam), anti-Raf1 antibody (A19638, Abclonal), anti-phospho-Raf1-S259 antibody (AP1012, Abclonal), anti-MEK1/MEK2 antibody (A4868, Abclonal), anti-phospho-MAP2K1-S217/MAP2K2-S221 antibody (AP0209, Abclonal), anti-ERK1/2 antibody (A4782, Abclonal), anti-phospho-ERK1-T202/Y204 + ERK2-T185/Y187 antibody (AP0472, Abclonal), anti-p90Rsk antibody (A4695, Abclonal), anti-phospho-P90RSK-S380 antibody (AP0562, Abclonal), anti-ERα antibody (ab32063, Abcam), anti-phospho-ERα (Ser167) antibody (64508s, Cell Signaling Technology), anti-phospho-ERα (Ser118) antibody (ab32396, Abcam), anti-CCND1 antibody (ab40754, Abcam), anti-c-MYC antibody (SC-40, Santa Cruz Biotech) and anti-ACTIN antibody (8432, Cell Signaling Technology).
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2

Molecular Regulation of Osteoclastogenesis

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MedChemExpress (New Jersey, USA) provided the high purity (≥99.0%) SAHA used in this study. Dimethyl sulfoxide (DMSO) (Sigma–Aldrich, Sydney, NSW, Australia) was employed to prepare SAHA to a concentration of 10 mM for storage at − 20 °C before being diluted to working concentrations with culture medium. Dulbecco’s modified Eagle’s medium (DMEM/high glucose) along with fetal bovine serum (FBS) were acquired from HyClone (Logan, UT, USA), whereas recombinant murine RANKL was supplied by R&D system (Minneapolis, MN, USA). FITC-phalloidin was procured from Thermo Fisher Scientific (Scoresby, VIC, Australia) and DAPI staining solution was bought from Beyotime (Shanghai, China). Primary antibodies against β-Actin (AC006), NFATc1 (A1539), CTSK (A5871), MMP9 (A11147), phospho-P38 (AP0057), phospho-ERK (AP0485), ERK (A4782), and phosphor-P65 (AP0475) were obtained from ABclonal (Wuhan, China). Primary antibody against IκB-α (AF5002) was obtained from Affinity Biosciences (Jiangsu, China). Primary antibodies for P38 (ab170099), phospho-JNK (ab76572), JNK (ab208035), and TRAF6 (ab40675) were purchased from Abcam (Cambridge, UK). The corresponding secondary antibodies were purchased from Beyotime (Shanghai, China). Yangming Biotechnology (Hangzhou, China) supplied bovine bone slices.
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3

Investigating Chiauranib's Effects on VEGFR2 Signaling

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Prior to Western blot analysis, chiauranib was administered at the appropriate concentrations to DOHH2 and RL cells for 24 h. Cells were collected and lysed using RIPA buffer (Beyotime, P0013C) after treatment. The following primary antibodies were used: VEGFR2 (A11127, 1:1000, Abclonal, Wuhan, China), P-VEGFR2 (AP0382, 1:1000, Abclonal), P-RAF (9421S, 1:1000, CST), MEK1/2 (A4868, 1:1000, Abclonal), P-MEK1/2 (AP0209, 1:1000, Abclonal), ERK1/2 (A4782, 1:1000, Abclonal), P-ERK1/2 (AP0974, 1:1000, Abclonal), STAT3 (A19566, 1:1000, Abclonal), P-STAT3 (AP0715, 1:1000, Abclonal), and GAPDH (AC001, 1:1000, Abclonal).
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4

Investigating Molecular Pathways in Renal Cancer

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Tianjin Institute of Urology (Tianjin, China) provided the Caki-1, A498 and OSRC-2 cell lines. ENCODE cell culture standards were followed when growing the cells.
The primary anti-SAA1 (A1655, ABclonal, China), anti-ERK1/2 (A4782, ABclonal, China), anti- Phospho-ERK1-T202/Y204 + ERK2-T185/Y187 (AP0974, ABclonal, China), anti-c-Jun (A0246, ABclonal, China), and anti-ß-Actin (AC026, ABclonal, China) antibodies were used according to the instructions.
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5

Western Blot Analysis of Tight Junction Proteins

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Liver and intestinal tissues were lysed in RIPA buffer containing protease inhibitors (Solarbio Science & Technology Co., Ltd., Beijing, China) and phosphatase inhibitors (Applygen Technologies Inc., Beijing, China). After centrifugation, the protein concentration of the lysate was determined with a BCA protein assay kit (P0012, Beyotime, Shanghai, China). An appropriate amount of protein was separated on SDS-PAGE and transferred onto polyvinylidene fluoride membranes (Millipore). The membranes were blocked after 1.5 h with 5% skim milk and incubated with antibodies against ZO-1 (Ab96587, Abcam, Cambridge, UK), Claudin-1 (Ab180158, Abcam), Occludin (Ab216327, Abcam), MEK1/2 (A4868, ABclonal, Wuhan, China), p-MEK1/2 (AF3385, Affinity Biosciences, Jiangsu, China), ERK1/2 (A4782, ABclonal), p-ERK1/2 (AP0234, ABclonal), pIgR (A6130, ABclonal), or GAPDH (A6130, Proteintech, Wuhan, China) overnight at 4 °C. Subsequently, the membranes were incubated with horseradish peroxidase-conjugated second antibodies against mouse or rabbit IgG (LF102 and LF101, respectively, Epizyme, Inc., Shanghai, China) for 1 h at 25 °C. Protein bands were visualized using a Bio-Rad immunoblot analysis detection system (Bio-Rad Laboratories, Hercules, CA, USA). Western blot band quantification was performed using ImageJ (Bethesda, MD, USA) software and normalized to GAPDH.
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6

Western Blotting Assay Protocols

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Western blotting assays were conducted as previously reported [18 (link)]. The primary antibodies were as follows PR55α (1/1000, A2185, Abclonal, China), AKT (1/1000, A17909, Abclonal, China), p-AKT-T308 (1/1000, AP0304, Abclonal, China), P-AKT-S473 (1/1000, AP0140, Abclonal, China), ERK1/2 (1/1000, A4782, Abclonal, China) and p-ERK1/2-T202/Y204 (1/1000, AP0472, Abclonal, China).
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7

Western Blot Analysis of Protein Expression

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The cells were lysed with RIPA buffer (Beyotime, China) containing protease inhibitors (MCE, USA) and phenylmethanesulfonyl fluoride (PMSF) (Sigma, USA). Protein concentrations were determined using a BCA protein assay kit (Beyotime, China). Proteins were separated using 10% or 12% SDS-PAGE, transferred to PVDF membranes (Roche, Switzerland), and blocked with 5% skim milk (BD, USA) for 1 h. After washing, the samples were incubated with the primary antibody overnight at 4 °C. The next day, the PVDF membrane was incubated with the secondary antibody for 2 h at room temperature, and the protein level was detected using the ChemiDoc XRS + imaging system (Biorad, USA). The primary antibody was used at a 1:1000 dilution. Antibody product numbers are as follows: anti-OGDHL (A15475, ABclonal, China), anti-FASN (A19050, ABclonal, China), anti-TFAP2A (13019-3-AP, Proteintech, China), anti-FTO (A3861, ABclonal, China), anti-RUNX1 (A0400, ABclonal, China), anti-ARNT (A0972, ABclonal, China), anti-CyclinD1(A2708, ABclonal, China), anti-MMP2 (A19080, ABclonal, China), anti-MMP9 (A0289, ABclonal, China), anti-pERK (AP0485, ABclonal, China), anti-ERK (A4782, ABclonal, China), anti-GAPDH (A19056, ABclonal, China). The original blots of the western blotting can be found in the Original data files.
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8

Western Blot Analysis of Protein Expression

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Total protein was extracted by the RIPA lysis buffer and the protein concentration was determined with BCA protein assay kits (Beyotime). Approximately 20 µg of protein from each sample was separated by polyacrylamide gel electrophoresis for 2 h and transferred to a polyvinylidene fluoride membrane. The membrane was then blocked with 5% skim milk in Tris-buffered saline with Tween-20 for 1 h. The membranes were incubated with primary antibodies overnight at 4°C: Collagen 1 (ab138492, 1:1,000; Abcam), α-SMA (A17910, 1:1,000; ABclonal), NR4A2 (ab54366, 1:1,000; Abcam), ERK1/2 (A4782, 1:10,000; ABclonal), p-ERK1/2 (AP0234, 1:1,000; ABclonal), IGF2 (ab262713, 1:1,000; Abcam), MMP13 (ab39012, 1:3,000; Abcam), Ki67 (ab16667, 1:1,000; Abcam), TGF-β1 (ab215715, 1:1,000; Abcam), MMP12 (A3713, 1:1,000; ABclonal), MMP2 (A6247, 1:1,000; ABclonal), and GAPDH (ab9485, 1:2,500; Abcam). Subsequently, the membrane was incubated with HRP-conjugated goat anti-rabbit secondary antibodies at room temperature for 1 h. Protein bands were visualized using ECL reagents and the intensity of each band was quantified using Image Lab software (version 4.1; Bio-Rad Laboratories, Inc., Hercules, CA, USA).
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