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21 protocols using roxithromycin

1

Macrolide Biosensor Development in E. coli

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The strains and plasmids used in this study are listed in Table S1. E. coli strains 10G (Lucigen) and TOP10 (Invitrogen) were used for cloning and biosensor expression, respectively. Aeromicrobium erythreum NRRL B3381 and the corresponding knock-out strain were a kind gift from Prof. Eric Miller, NC State University. The plasmid pMLGFP was used as a template for MphR mutagenesis and to express the reporter gene in the biosensor strains. Bacteria were grown in Luria Broth supplemented with ampicillin and tetracycline as appropriate. ErA, clarithromycin, azithromycin, and roxithromycin were from Sigma-Aldrich and pikromycin was from Abcam. YC-17 was a kind gift from Prof. David Sherman, University of Michigan. Each macrolide was prepared in dimethyl sulfoxide (DMSO) to a stock concentration of 50 mM, 5 mM, 500 μM, or 50 μM. All other chemicals were purchased from Sigma-Aldrich unless stated otherwise. PCR products were extracted with a Bio Basic Gel Extraction Kit. Restriction enzymes were purchased from New England Biolabs. Plasmids were isolated using a plasmid miniprep kit from Bio Basic.
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2

Fibroblast Cell Assay with Macrolides

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MRC-5 (ATCC® CCL-171) human lung fibroblast cells and BJ (ATCC® CRL2522) human skin fibroblasts were purchased from the ATCC (American Type Culture Collection). Gibco-brand cell culture media (MEM) was purchased from Life Technologies. Bromodeoxyuridine, Azithromycin, Roxithromycin and Erythromycin were purchased from Sigma-Aldrich. Azithromycin (from Pfizer) is FDA-approved. Roxithromycin (from GSK and Sandoz) is not available in the United States, but is clinically-approved in New Zealand, Australia and Israel.
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3

Macrophage Cytokine Response to Antibiotics

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Monocytes were resuspended at a density of 1 × 106/ml in medium as described above. The cell suspension was seeded on 96-well plates, and azithromycin, clarithromycin, or roxithromycin (all obtained from Sigma) were added in the indicated concentrations just before stimulation with either 100 ng/ml LPS 0111:B4 (L-4391, Sigma) or 100 ng/ml flagellin (Invivogen, San Diego, CA). After 18–20 h incubation, the supernatants were collected, centrifuged for 5 min at 400 × g and used for further analysis. In the Ca++-depleting experiments, cells were treated as described above but were stimulated in medium containing 10 mM EGTA (Sigma). In the Ca++-channel blocking experiments, cells were incubated with 125 μM verapamil (Sigma) for 30 min before treatment with azithromycin and LPS stimulation (verapamil was not removed during stimulation). Cytokine measurements of TNF-α, IL-1β, IL-1α, IL-6, and IL-8, were performed by Luminex® testing using specific matched-pair antibodies and recombinant cytokines as standards (Merck Millipore, Billerica, MA). IL-18 was measured with a human IL-18 Instant ELISA (eBioscience, Vienna, Austria; detection limit: 9.2 pg/ml).
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4

Metabolic Drug Interaction Profiling

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Crizotinib, diltiazem, erythromycin, imatinib, nilotinib, pazopanib, roxithromycin, and verapamil were obtained from Sigma-Aldrich (St. Louis, MO). Nefazodone and azithromycin were purchased from Toronto Research Chemicals (Toronto, ON) and telithromycin from Cayman Chemical Company (Ann Arbor, MI). Midazolam was obtained from Cerilliant Corporation (Round Rock, TX), 1′-hydroxyMidazolam from Ultrafine Chemical Co. (Manchester, England) and nicotinamide adenine dinucleotide phosphate (NADPH) from AppliChem (Darmstadt, Germany). HLM from 50 individual mixed-sex donors were purchased from Xenotech (Lenexa, KS). Human hepatocytes were isolated in house from liver tissue obtained from a female donor undergoing surgical resection at the Department of Surgery, Uppsala University Hospital (Sweden) and cryopreserved as described previously34 (link),35 (link). Ethical approval was granted by the Uppsala Regional Ethics Committee (ethical Approvals Nos 2009/028 and 2011/037). Donors gave informed consent and all studies were performed in accordance with the current national regulations and ethical guidelines.
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5

Quantification of Tylvalosin in Samples

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Tylvalosin (Aivlosin®) was obtained as 62.5% water-soluble white granules (ECO Animal Health, London, UK). Each gram powder contains 625 mg of TVN as TVN tartrate. The internal standard, roxithromycin was obtained from Sigma-Aldrich Corp. (St. Louis, U.S.A.). Other chemicals and reagents consumed in the current study were acquired commercially and of HPLC grade.
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6

Antibiotic Quantification in Biofilms

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Twenty investigated antibiotics—enrofloxacin (ENR), erythromycin (ERY), levofloxacin (LVX), norfloxacin (NFX), oxytetracycline (OTC), sulfamethazine (SMZ), sulfamethoxazole (SMX), sulfaquinoxaline (SQX), trimethoprim (TMP), ciprofloxacin (CPR), metronidazole (MTZ), roxithromycin (RXM), clarithromycin (CLR), flumequine (FMQ), enoxacin (ENX), tylosin tartrate (T-T), midecamycin (MED), spiramycin (SPR), josamycin (JOS), azithromycin (AZM) (Supplementary Table 1) were purchased from Sigma Aldrich (Buchs, Switzerland). LC/MS-grade methanol, acetonitrile and formic acid were purchased from Carlo Erba Reagents (Val-de-Reuil, France), ultrapure water (>18.2 MΩ cm–1) was prepared with the Milli-Q IQ 7000 system (Millipore SAS, Molsheim, France). Individual raw solutions (200 mg/L) were prepared for each antibiotic by dissolving the standard powder in methanol and stored in the dark at −20°C. The standard solution mixtures were prepared at three concentrations (10, 5, 1 mg/L) by diluting the raw solutions with water and then stored in the dark at 4°C. Antibiotics were measured in all the collected biofilms by the procedure described in Aubertheau et al. (2017) (link).
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7

Antimicrobial and Antioxidant Assays

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PhosPhate buffer was acquired from Riedel-de Haen, Seelze, Germany while Sabouraud dextrose agar from Oxoid, England. Ferric chloride, Potassium ferricyanide, Trichloroacetic acid (TCA), Tryptone soy broth, Surfactin, Doxorubicin, Ascorbic acid, 2,2-diphenyl-1-picrylhydrazyl (DPPH), Nutrient agar, Sea salt, Standard antifungals (clotrimazole and amphotericin B) and Standard antibiotics (cefixime and roxithromycin) were purchased from Sigma Aldrich, Saint Louis, MO, USA. Dried instant yeast was acquired from Fermipan BDH, Poole, England and Medium ISP4 was formulated in laboratory. Brine shrimp “Artemia salina” eggs were acquired from Ocean star Int., Coral springs, FL, USA and Tween-20 from Merck-Schuchardt, USA. Microplate reader was purchased from Biotech, Minneapolis, MN, USA, microplate reader Elx 800 while Eppendorf tubes were acquired from Merck, Kenilworth, NJ, USA. Bacterial and fungal strains were acquired from (Microbiologics, Saint Cloud, MN, USA). Eppendorf tubes were taken from Merck, Kenilworth, NJ, USA.
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8

Phytochemical Profiling and Bioactivity

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In this study, solvents that were used for extraction purpose were of analytical grade. The solvents included dimethyl sulfoxide, methanol, acetone, ethyl acetate, ethanol, chloroform, and n-hexane. The solvents and reagents like dipotassium hydrogen phosphate, potassium dihydrogen phosphate, ferric chloride, trichloroacetic acid, ammonium molybdate, potassium ferricyanide, sulphuric acid, aluminium chloride and potassium acetate were purchased from Merck, Darmstadt, Germany. 2,2-diphenyl-1-picryhydrazyl (DPPH) and Folin-Ciocalteu reagent were bought from Sigma–Aldrich (Steinheim, Germany). Tween-20 was bought from Merck (Schuchardt, USA), while Phosphate Buffer Saline (PBS), nutrient agar, Sabouraud dextrose agar (SDA), Ttryptone Soy Broth (TSB),sterile normal saline solution (0.9%), sea salt, 0.5% triton x-100, roxithromycin and cefixime, clotrimazole and amphotericin B, doxorubicin, vincristine, surfactin, were purchased from Sigma (Sigma Aldrich, USA), Medium ISP4 (was Prepared in lab), and those reagents that were used i.e.myricetin, gallic acid, rutin, kaempferol catechin,caffeic acid, quercetin, ascorbic acid, were also purchased from Merck, Darmstadt, Germany.
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9

Analytical Evaluation of Phytochemicals

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The study involved the use of analytical grade solvents which were purchased from Sigma (Sigma-Aldrich USA) i.e. n-hexane (n-Hex); Chloroform (CHCl3); Acetone (Ace); Ethyl acetate (EtOAc); Ethanol ((EtOH); MEthanol (MeOH) and Dimethyl sulfoxide (DMSO). The reagents; Gallic acid (G7385); Quercetin (Q4951); 2,2-diphenyl-1-picryl-hydrazyl (Cat#757621; DPPH); Potassium acetate; Aluminum Chloride; Folin-ciocaltau (F-C) reagent -Sodium carbonate; Ascorbic acid (A5960); Ammonium molybdate; Sodium phosphate; Sulfuric acid; Ferric cyanide; Trichloroacetic acid and Potassium ferricyanide were procured from Merck (Merck KGaA, Germany). Roxithromycin (R4393); Cefixime (1097658); Terbinafine (T8826), Doxorubicin (D1515), Taxol (T1912) and Amphotericin-B (A2942) was obtained from Sigma (Sigma-Aldrich USA) were used Reference standards in the current study.
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10

Comprehensive Evaluation of Pharmaceutical Compounds

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Remdesivir (RDV), GS704277, THC, CBD, CBN, hydroxychloroquine were purchased from Cayman Chemical (Ann Arbor, MI). Azithromycin was purchased from Pfizer Inc. (New York NY). Erythromycin, clarithromycin was purchased from Abbott Laboratories Inc. (Chicago, IL). Dexamethasone, trimethoprim, ivermectin ciprofloxacin, roxithromycin, vancomycin, aripiprazole, ziprasidone, and phenacetin were purchased from Sigma-Aldrich Inc. (St. Louis, MO). Phosphate buffered saline (PBS) was purchased from Thermo Fisher Scientific Inc. (Waltham, MA). All other chemicals and reagents were of the highest analytical grade and were commercially available.
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