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6 protocols using e ab 20059

1

Western Blot Analysis of E. coli AmpC

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Western blotting was performed as described previously (Ballesteros-Plaza et al., 2013 (link)) with some modifications: E. coli cells were sonicated. E. coli cell (1 × 108 CFU) lysates were boiled in 5× loading buffer [0.25M Tris-HCL (pH 6.8); 10% (w/v) sodium dodecyl sulfate; 0.5% (w/v) bromophenol blue; 50% (v/v) glycerol; 5% (w/v) β-mercaptoethanol], and proteins were separated by SDS-PAGE and transferred to polyvinylidene difluoride membranes using eBlot Protein Transfer Device (Genscript), according to manufacturer’s instructions. Membranes were probed with anti-E. coli AmpC Ab (mouse polyclonal antiserum; for details of preparation, see Supplementary Data) and anti-GAPDH Ab (1:1000 in PBS, rabbit polyclonal, #E-AB-20059, from Elabscience) followed by horseradish peroxidase (HRP)-conjugated goat anti-mouse Antibody (1:5000 in PBS, #bsm-0294M-HRP, Bioss, China). Chemiluminescence was developed using an Immobilon Western chemiluminescent HRP substrate (Millipore) and documented using a Tanon 5200 milti (Biotanon). Densitometry was performed using ImageJ software (Ver 1.4.3.67) and was normalized to GapA (probed by anti-GAPDH Ab) (Wu et al., 2012 (link)).
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2

Protein Expression Analysis Protocol

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The operation details were described in our previous research [10 (link)]. Proteins were determined using a bicinchoninic acid assay (InCellGene, IC-7991, USA). The primary antibodies were anti-NID1 (Proteintech,13766-1-ap,China,1:500), anti-myosin-10(Proteintech,19673-1-ap,China,1:200), anti-Rac1/cdc42(Affinity, DF6332,USA,1:1000),anti-Vinculin(Sigma-aldrich,v1931,USA,1:500), anti-Paxillin (Abcam, ab32115, UK, 1:500), anti-FAK (Abcam, ab40794, UK, 1:1000), anti-GAPDH (Elabscience, E-AB-20059, USA, 1:2000).
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3

Muscle Cell Fractionation and Analysis

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Cell fractionation and analysis from gastrocnemius muscle were performed as described previously [62 (link)]. Briefly, 100 mg of gastrocnemius muscle was resuspended in 0.5 mL of ice-cold buffer B (150.0 mM NaCl, 10.0 mM TRIS HCl pH 7.4, 1.0 mM EDTA, supplemented with protease inhibitors), passed through a 21-gauge needle 20 times. A 50 µL quantity of the resuspended sample was stored by transferring it into a new 1.5 mL microcentrifuge tube and used as total homogenate. The remaining fraction was centrifuged at 400 rpm for 5 min at 4 °C. The resulting supernatant was centrifuged at 14,000 rpm for 10 min at 4 °C in an Eppendorf centrifuge to pellet the Heavy Membranes (HM). The supernatant was centrifuged at 45,000 rpm for 30 min at 4 °C in a Beckman Coulter TL-100 centrifuge (Brea, CA, USA) to pellet the Light Membranes (LM) and isolate the Cytosolic fraction. The collected fractions were resolved on linear 10% polyacrylamide gel and analyzed for the expression of anti-GLUT-4 primary antibody (anti-Glucose Transporter GLUT-4 [1F8], ab35826, Abcam), anti-CNX (anti-Calnexin, ADI-SPA-860-F, Enzo Life Sciences, Pero (MI) Italy) and anti-GAPDH antibody (Elabscience, cod. E-AB-20059). The intensities of the corresponding bands were determined and quantified with ImageJ 1.52k Wayne Rasband, NIH (Bethesda, MD, USA) (http://imagej.nih.gov/ij).
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4

Western Blot Analysis of SLC7A1 and GAPDH

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Total protein was obtained from cells using RIPA lysis buffer (Solarbio, Beijing, China). Proteins were isolated by electrophoresis using a 10% PAGE gel rapid preparation kit from Shanghai Yase Biomedical Technology Co., Ltd. The proteins were then transferred to PVDF membranes (Amersham, Germany) by 290 mA constant current for 120 min. After sealing with 5% skim milk powder at room temperature for 2 h, the membranes were incubated with primary anti-SLC7A1 (1 : 1000; Proteintech Cat# 14195-1-AP, RRID: AB_2190723) or anti-GAPDH (1 : 4000; Elabscience Cat# E-AB-20059, RRID: AB_2905551) antibodies. Then, each membrane was washed three times and incubated with a secondary antibody (1 : 2000; Elabscience, Wuhan, China). Protein bands were detected by enhanced chemiluminescence (Millipore, Billerica, USA).
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5

Western Blot Analysis of Cellular Stress Markers

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The cell lysate was prepared for SDS-PAGE as described previously [23 (link), 34 (link)]. The proteins were transferred to PVDF membranes and blocked in 5% nonfat milk at room temperature for 1 h, then incubated at 4 °C overnight with the following primary antibodies: rabbit anti-MANF antibody (1: 1000, Abcam, ab67271), rabbit anti-BiP antibody (1:1000, proteintech, 11587-1-ap), rabbit anti-CHOP antibody (1:1000, proteintech, 15204-1-AP), rabbit anti-phospho-eIF2α antibody (1:1000, CST, 3398 s), rabbit anti-phospho-IRE1 antibody (1:1000, Bioss, bs-4308R), rabbit anti-XBP1s antibody (1:1000, Biolegend, 619502), mouse anti-ATF4 antibody (1:1000, CST, 11815 s), rabbit anti-ATF6 antibody (1:1000, Proteintech, 24169-1-AP), rabbit anti-cleaved-caspase 3 antibody (1: 1000, CST, 9664S), mouse anti-α-tubulin (1: 1000, sigma, t6199), and rabbit-anti-GAPDH (1: 1000, Elabscience, E-AB-20059). After washing several times in TBST, membranes were incubated with horseradish peroxidase-conjugated secondary IgG for 1 h. Blots were developed using the enhanced chemiluminescence kit (Amersham Biosciences, NJ, USA). The densitometric analysis was performed using ImageJ software.
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6

Protein Expression Analysis Protocol

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The cells were lysed with 2% SDS buffer. After transfer, the membrane was incubated with primary antibodies against SLC2A3 (R24453, Zen Bio), E-cad (bs -10,009 R, Bioss), N-cad (bs-1172 R, Bioss), Vimentin (bs-0756 R, Bioss), Snai1 (bs-1371 R, Bioss), and NF-κB P65 (AP0123, ABclonal). GAPDH (E-AB-20059, Elabscience) and α-tubulin (AC007, ABclonal) were used as loading controls. The bands were quantified with ImageJ software and normalized to the loading control.
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