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Total rna extraction reagent

Manufactured by Takara Bio
Sourced in Japan, China

The Total RNA Extraction Reagent is a complete solution for the rapid and efficient extraction of high-quality total RNA from a variety of biological samples. It utilizes a guanidinium thiocyanate-phenol-chloroform extraction method to ensure the isolation of intact, full-length RNA molecules.

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12 protocols using total rna extraction reagent

1

Nanog Expression Analysis in Transfected Cells

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The total RNA of transfected cells was isolated according to the protocol of Total RNA Extraction Reagent (Takara, Beijing, People’s Republic of China). Analysis was carried out by a StepOne™ PCR System. The sequences of primers were as follows: forward 5′-CCGACTGTAAAGAATCTTCACCTATG-3′ and reverse 5′-TCA GGGCTGTCCTGAATAAGC-3′ for Nanog, and forward 5′-GAGTCCACTGGCGTCTTCA-3′ and reverse 5′-GGGGTGCTAAGCAGTTGGT-3′ for GAPDH (as the reference gene). Nanog gene expression level was analyzed using the formula of 2−(ΔΔCT) method.
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2

Total RNA Extraction and Reverse Transcription

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Following the addition of total RNA extraction reagent (Grand Island, NY, USA), total RNA was extracted from the collected cells using RNAiso™ Plus kits (Takara, Japan) according to the manufacturer’s instructions. RNA concentration was determined using a spectrophotometer (Beckman Coulter, USA). Reverse transcription was performed using the FastQuant cDNA first strand synthesis kit (TIANGEN, China) and amplified with HSF1-specific primers (Invitrogen, USA) using the TaKaRa RNA PCR kit (AMV, Ver. 3.0) according to the manufacturer’s instructions. The amplified products were analyzed by 1.5% agarose gel electrophoresis.
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3

Total RNA Extraction and qPCR Analysis

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Total RNA was extracted from treated cells using a Total RNA Extraction Reagent (Takara, Beijing, China) according to the instructions provided by the manufacturer. RNA concentration and purity were determined by measuring the absorbance at 260 and 280 nm using a NanoDrop 2000 spectrophotometer (Thermo Fisher Science Inc.). Reverse transcription was then performed with the Prime SCRIPT RT kit (Takara). Quantitative PCR was performed with a CFX96™ Real-Time System (Bio-Rad, Hercules, CA, USA) using the SYBR PreMix Ex Taq II kit (Takara). The PCR cycle procedure comprised a 20 μL reaction system (containing 6.4 μL of enzyme-free water, 0.8 μL of forward primer, 0.8 μL of reverse primer, 2 μL of cDNA, and 10 μL of SYBR premix Ex Taq). Denaturation was first performed at 95 °C for 1 min, followed by 40 cycles of amplification at 95 °C for 30 s and 58 °C for 60 s. The results were normalized to the expression of β-actin and calculated using the 2−ΔΔCT method. The primers for the genes are shown in Table 1.
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4

Quantitative Analysis of Circadian Genes in A549 Cells

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Total RNA from A549 cells was isolated according to the Total RNA Extraction Reagent (Takara, Beijing, China) protocol. Analysis was carried out with a StepOne™ PCR System. The sequences of primers were as follows: Forward 5′-CTATTCTCCCATTCGGTTTCG-3′ and Reverse 5′-CACCCTGACTTTGTGCCTCC-3′ for Per2, Forward 5′-TGTCGCCCTTTTCTACTTTGC-3′ and Reverse 5′-GAGGCTTGAGGAGTCTCACCC-3′ for Bax, Forward 5′-ACATCGCCCTGTGGATGACT-3′ and Reverse 5′-AGGGCCAAACTGAGCAGAGTC-3′ for Bcl-2, and Forward 5′-CATCATCCCTGCCTCTACTGG-3′ and Reverse 5′-GTGGGTGTCGCTGTTGAAGTC-3′ for GAPDH (as the reference gene). Per2, Bax, and Bcl-2 mRNA expression levels were analyzed using the 2−(ΔΔCT) method.
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5

RNA Extraction and qPCR Analysis

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Total RNA was extracted from RAW264.7 cells using the RNAiso Plus kit. Total RNA extraction reagent (Takara, Shiga, Japan) was used and cDNA was synthesized using the BioFact RT Series kit. PCR amplification was monitored by CFX Connect Real-Time PCR software (version 1.4.1; Bio-Rad Laboratories, Hercules, CA, USA). The primers used are listed in Table 1.
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6

Quantification of miRNA Expression via qRT-PCR

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Total RNA was extracted from each sample by using a total RNA extraction reagent (Takara, Kusatsu, Japan), and was then reverse transcribed into cDNA with Mir-X miRNA First-Strand Synthesis kit (Takara, Kusatsu, Japan). The sequences of the miRNA-specific primers for real-time qPCR are listed in Table 2, and the reverse primer was the mRQ 3′ primer provided in Mir-X miRNA First-Strand Synthesis kit. qRT-PCR was performed using SYBR Premix Ex Taq (Takara, Kusatsu, Japan) for selected miRNAs. The reaction volume was 25 μL, and the qRT-PCR conditions were as follows: 30 s at 95°C, 40 cycles of 5 s at 95°C, and 30 s at 60°C, followed by a melting curve analysis step. Every sample was repeated three times, and relative quantification was performed by the 2−ΔΔCq method. U6 was used as the endogenous control to normalize the data.
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7

Quantitative Real-Time PCR Analysis

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Total RNA was extracted and purified from the cells using the RNA isolator Total RNA Extraction Reagent (TaKaRa, Kusatsu, Japan) and subjected to reverse transcription using the PrimeScript™ RT Master Mix Kit (TaKaRa, Kusatsu, Japan). The real-time PCR and data collection were subsequently performed as described previously [30 (link)] using the AceQ® qPCR SYBR® Green Master Mix kit (TaKaRa, Kusatsu, Japan) on ABI 7500 system (ABI, New York, USA). Primers used for the amplification were as follows: TRIM72-F: 5′-CGAGCAGGACCGCACACTT-3′, TRIM72-R: 5′-CCAGGAACATCCGCATCTT-3′; insulin receptor substrate-1 (IRS-1) F: 5′-GAAGAAGTGGCGGCACAAGT3′, IRS-1 R: 5′-GTCAGGCAGAGGCGGTAGAT-3′; IRS-2 F: 5′-ATACCGCCTATGCCTGTCTG-3′, IRS-2 R: 5′-AGAAGAAGCTGTCCGAGTGG-3′; IRS-3 F: 5′-GCAGAGCAGCAAACATGGTA-3′, IRS-3 R: 5′-GCGAAGATCCAAGACTCAGG-3′; IRS-4 F: 5′-TTGCTGACAGTGCCATTTGC-3′, IRS-4 R: 5′-TGCACTTCTTCCTGCCTAGC-3′; and glyceraldehyde-3-phosphate dehydrogenase (GAPDH) F: 5′-GC ACCGTCAAGGCTGAGAAC-3′, GAPDH R: 5′-TGGTGAAGACGCCAGTGG A-3′. The relative expression levels of the indicated mRNA normalized against GAPDH mRNA were calculated using the 2−ΔΔCT methods.
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8

Quantitative Gene Expression Analysis

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Total RNA extraction reagent (TaKaRa, Dalian, China) was used to extract the total RNA from the RVLM. The mRNAs of prorenin, PRR, NLRP3, pro-Casp-1, ASC, IL-1β, TNF-α, IL-10, and TGF-β were analyzed by quantitative real-time PCR. Isolated mRNA was quantified by spectrophotometry and the 260/280 nm optical density ratio was calculated. The cDNA was synthesized using a high-capacity cDNA reverse transcription kit (Applied Biosystems, ABI). The relative quantification of gene expression was expressed as fold-change via normalization against β-actin by using the 2ΔΔCT method. The sequences of primers were designed using Primer Express 2.0 and are listed in Table S1.
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9

Reagents and Chemicals Utilized

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Chemicals and reagents used in this study were purchased from the following sources: corn oil and tamoxifen from Aladdin (Shanghai, China); Taq Plus Master Mix Ⅱ, GelRed Nucleic Acid Stain, agarose gel, DNA markers, and DNA Isolation Kit from Vazyme (Nanjing, China); total RNA extraction reagent, RT-PCR kit, and SYBR Premix Ex Taq™ kit from Takara (Dalian, China); eIF3a and GAPDH antibody from Abcam (Cambridge, UK); methanol, ethanol, acetone, and acetonitrile from Sinopharm (Shanghai, China); and BCA Protein Assay Kit from Invitrogen (Grand Island, United States).
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10

Quantifying Apoptosis-Related Gene Expression in HepG2 Cells

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For the assessment of mRNA expression in HepG2 cells, qRT-PCR was performed as previously described (Yoo et al., 2019 ). Cells were exposed to 40 μM PFOA and various concentrations of GenX (40, 100, 250, and 500 μM) for 12 h. Total RNA extraction reagent (Takara, Shiga, Japan) was used to extract RNA. Legene Premium Express first-strand cDNA synthesis system (Legene Biosciences, San Diego, CA, USA) was used for cDNA synthesis. Apoptosis-related gene expression levels were assessed using SYBR Green real-time PCR master mix (Elpis, Daejeon, Republic of Korea) and iQ5 detection system (BioRad, Hercules, CA, USA). The results were calculated using the 2-ΔΔCt method (Livak and Schmittgen, 2001 (link)), and normalized against β-actin as a housekeeping gene. The sequences of primers used are shown in Supplementary Table 1.
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