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3 protocols using goat anti rabbit alexa fluor 594

1

Proteasome Regulation and NEDD8 Identification

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Most common chemicals were purchased from Sigma Aldrich. MLN4924 (Takeda Pharmaceuticals), MLN7243 (Chemietek), MG132 (Viva Bioscience), Lipofectamine RNAiMAX (Invitrogen), siRNA On-TARGETplus SMARTpools (Dharmacon), protease Inhibitor Cocktail Tablets EDTA-free, Fugene6 HD (Roche), Suc-LLVY-AMC peptide (BostonBiochem). Rabbit monoclonal anti-NEDD8 (1:2000), Y297 (GeneTex, GTX61205), FK2 mouse anti-ubiquitin, stainings (1:250) (Viva Bioscience, VB2500), rabbit anti-ubiquitin (1:2000), western blotting (DAKO, Z0458), mouse anti-fibrilarin (1:1000) (ab4566), rabbit anti-nucleolin (1:1000) (ab22758), mouse anti-GAPDH (1:5000) (6C5, ab8245), rabbit anti-RPL7 (1:2000) (ab72550) (Abcam), mouse anti-tubulin (1:2000) (Cell Signalling, 3873), mouse anti-HA (1:2000) (12C5, 11583816001), mouse anti-GFP (1:500) (11814460001) (Roche), mouse anti-a6 proteasome subunit (1 μg/ml) (Enzo Life Sciences, BML-PW8100), rabbit polyclonal anti-HUWE1 (1:2000) (Bethyl laboratories, A300-486A), mouse monoclonal anti-p21 (1 μg/ml) (F-5, sc-6246, Santa Cruz), rabbit polyclonal anti-CDT1 (1:1000) (# 06-1295, Millipore), goat anti-mouse Alexa Fluor® 488 (115-545-146), goat Anti-Rabbit Alexa Fluor® 594 (111-585-008) (Jackson ImmunoResearch).
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2

Quantifying FMRP and MeCP2 in Neurons and Astrocytes

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At 65 ± 2 days postinjection, the AAV-FMRP- and AAV-EV-injected mice were anesthetized using a ketamine–xylazine solution, then transcardially perfused with PBS, followed by 4% paraformaldehyde in PBS (pH 7.4). Serial coronal sections were cut at a thickness of 25 μm using a cryostat (Leica Microsystems, Wetzlar, Germany) as previously described (37 (link),55 (link)). Free-floating sections were washed with PBS, and antigen retrieval was performed as described elsewhere (56 (link)). Monoclonal mouse anti-FMRP 5c2 (57 (link)) was used along with monoclonal rabbit anti-MeCP2 D4F3 (Cell Signaling, Beverly, USA) at a 1:1000 dilution. To confirm the neuronal lineage of the cells, anti-NeuN (MAB377 from Millipore and ab177487 from Abcam) and anti-S100β (ab868 from Abcam and S2532 from Sigma) were used at 1:1000 dilutions to label neurons and astrocytes, respectively. The sections were labeled with goat anti-mouse Alexa Fluor 488 and goat anti-rabbit Alexa Fluor 594 (1:4000; Jackson Immunoresearch Laboratories, West Grove, USA). DAPI (Sigma-Aldrich) was used to label nuclei. Cell populations quantification was implemented in MATLAB version R2017a (9.2.0) and the code was included in the supplementary information. Only cells fully within this focal plane were quantified. Linear regression was performed using Graphpad Prism 5 to calculate the MeCP2/FMRP correlation parameters.
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3

Immunohistochemistry Analysis of Tongue Innervation

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Tumor tongue tissue was dissected, postfixed for 24 hours in 4% PFA, and cryoprotected in 30% sucrose at 4°C overnight. Tongue tissue was then embedded in Tissue-Tek OCT compound (Sakura Finetek, Torrance, CA), sectioned (20μm) coronally starting at the tip, and mounted on Superfrost Plus slides (Fisher Scientific). Slides were incubated in one of the following primary antibodies: rabbit anti-PGP9.5 (1:250, BosterBio), rabbit anti-TH (1:500, Millipore Sigma), or rabbit anti-CGRP (1:500, Cell Signaling) in PBS containing 1% bovine serum albumin overnight at room temperature. Slides were extensively washed in PBS, incubated in goat anti-rabbit Alexa fluor 594 (1:250, Jackson ImmunoResearch) for 2.5 hours and extensively washed. To quench autofluorescence due to collagen and striated tongue muscle, TrueVIEW autofluorescence quenching kit with DAPI (Vector Laboratories, Newark, CA) was used according to manufactuerer’s instructions.
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