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4 protocols using ma5 13065

1

Antibody Sources for Protein Analysis

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The rabbit anti-human PAD2 and PAD4 antibodies were obtained from Proteintech (12110–1-AP; Rosemont, IL) and Sigma-Aldrich (P4749; St. Louis, MO), respectively. The rabbit anti-human caspase-3, activating transcription factor 4 (ATF4), 78 kDa Glucose-regulated Protein (GRP78) and beta actin antibodies were obtained from Abcam (ab4051; Cambridge, UK), Santa Cruz Biotechnology (sc-200; Dallas, TX), LS Bio (LS-C312961; Seattle, WA), and Abcam (ab8227), respectively. The mouse anti-dog/cat estrogen receptor alpha (ERα) antibody was obtained from Thermo Fisher Scientific (MA5–13065; Waltham, MA). The human anti-modified citrulline antibody was obtained from Millipore (MABS487; Darmstadt, Germany). Alexa 488-conjugated goat anti-rabbit antibodies, HRP-conjugated goat anti-mouse antibodies, HRP-conjugated goat anti-rabbit and HRP-conjugated goat anti-human antibodies were all obtained from Jackson ImmunoResearch Labs (West Grove, PA). The PAD inhibitor, BB-CLA, was synthesized as previously described and diluted in dimethyl sulfoxide (DMSO) [25 (link)].
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2

Protein Expression and Interaction Analysis

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20 µg of protein aliquots from cell lysates of testis from V7BAC transgenic mice were separated by 15% SDS-PAGE and transferred to nitrocellulose membranes. The membranes were probed with primary antibodies against VAMP7 (sc-166394, 1:100, Santa-Cruz or sc-67060, 1:50, Santa-Cruz), AR (sc-816, 1:1,000, Santa-Cruz), ESR1 (MA1-310, 1:200, Thermo-Fisher), LMNA (sc-20681, 1:200, Santa-Cruz), GAPDH (sc-32233, 1:200, Santa-Cruz), and ACTB (AC-40, 1:5,000, Sigma). HeLa cells were cotransfected with AR or ESR1 or VAMP7 or in combination. After 24 h of overexpression, cell lysates were prepared and immunoprecipitation was carried out using antibodies raised against AR (sc-816, Santa-Cruz) or ESR1 (MA5-13065, Thermo-Fisher) or VAMP7 (sc-67060, Santa-Cruz) or control IgG antibody. The samples were later subjected to western blotting with the indicated antibodies. Input was 5% of the lysates.
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3

Protein Expression and Interaction Analysis

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20 µg of protein aliquots from cell lysates of testis from V7BAC transgenic mice were separated by 15% SDS-PAGE and transferred to nitrocellulose membranes. The membranes were probed with primary antibodies against VAMP7 (sc-166394, 1:100, Santa-Cruz or sc-67060, 1:50, Santa-Cruz), AR (sc-816, 1:1,000, Santa-Cruz), ESR1 (MA1-310, 1:200, Thermo-Fisher), LMNA (sc-20681, 1:200, Santa-Cruz), GAPDH (sc-32233, 1:200, Santa-Cruz), and ACTB (AC-40, 1:5,000, Sigma). HeLa cells were cotransfected with AR or ESR1 or VAMP7 or in combination. After 24 h of overexpression, cell lysates were prepared and immunoprecipitation was carried out using antibodies raised against AR (sc-816, Santa-Cruz) or ESR1 (MA5-13065, Thermo-Fisher) or VAMP7 (sc-67060, Santa-Cruz) or control IgG antibody. The samples were later subjected to western blotting with the indicated antibodies. Input was 5% of the lysates.
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4

Antibody Procurement for Chromatin Immunoprecipitation

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The WHSC1L1 antibody was purchased from ProteinTech Group Inc. (Cat. No.
11345-1-AP). The estrogen receptor alpha antibody was purchase from Bethyl Labs
(Cat. No. A300-498A). ChIP-grade anti-estrogen receptor alpha antibodies were
purchased from Santa Cruz (sc-543x) and Thermo Scientific (MA5-13065).
ChIP-grade histone antibodies were used for both ChIP and immunoblotting, and
were purchased from Abcam and Millipore: total H3 (Abcam ab1791), H3K36me3
(Abcam ab9050), H3K36me2 (Abcam ab9049), and H3K4me3 (Millipore 17-678).
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