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2 protocols using rabbit anti vapa

1

Fluorescent Labeling of Organelles

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Following antibodies were used in this study: Rabbit anti‐VAPA (Proteintech Cat#15275‐1‐AP), Rabbit anti‐VAPB (Proteintech Cat# 14477‐1‐AP), Rabbit anti‐KTN1 (Proteintech Cat#z19841‐1‐AP), Actin (Sigma‐Aldrich Cat# A5441), Anti‐Rabbit‐HRP (Thermo Fisher Cat#G‐21234), and Anti‐Mouse‐HRP (Thermo Fisher Cat#G‐21040). To inhibit microtubule (de)polymerization, tissue culture medium was supplemented with 2 µM of paclitaxel for two hours (Merck, USA) in DMSO. The late endosomal/lysosomal compartment was visualized using SiR‐lysosome at a concentration of 1 µM (Stein am Rhein, Switzerland). To ensure adequate retention of SiR‐lysosome, cells were treated with 10 µM Verapamil as per manufacturer’s recommendation. Mitochondria were labeled using Mitotracker Deep Red FM (Thermo Fischer, USA) at a concentration of 500 nM, as per manufacturers recommendation.
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2

Autophagy Protein Immunodetection Assays

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The following antibodies were used for immunostaining or immunoblotting assays: mouse anti-LC3 (MBL, M152-3), rabbit anti-LC3 (2775S; Cell Signaling Technology), rabbit anti-p62 (MBL, PM045), rabbit anti-FIP200 (SAB4200135; Sigma-Aldrich), rabbit anti-FIP200 (17250-1-AP; Proteintech), rabbit anti-ULK1 (8054; Cell Signaling Technology), rabbit anti-Atg13 (13468S; Cell Signaling Technology), rabbit anti-ATL2 (16688-1-AP; Proteintech), rabbit anti-ATL3 (ab117819; Abcam), mouse anti-WIPI2 (ab105459; Abcam), mouse anti-VAPB (66191-1-IG; Proteintech), rabbit anti-VAPA (15275-1-AP; Proteintech), mouse anti-LAMP1 (553792; BD Biosciences), rabbit anti-PTPIP51 (20641-1-AP; Proteintech), rabbit anti-ATG101 (13492; Cell Signaling Technology), rabbit anti-Myc (2278S; Cell Signaling Technology), mouse anti-Myc (M5546; Sigma-Aldrich), mouse anti-GFP (11814460001; Roche), mouse anti-actin (60008-1-IG; Proteintech), and rabbit anti-HA (H6908; Sigma-Aldrich).
The following reagents were used in this study: wortmannin (PHZ1301; Life Technologies), bafilomycin (B1793; Sigma-Aldrich), rapamycin (R0395; Sigma-Aldrich), Lipofectamine 2000 (12566014; Life Technologies), Lipofectamine RNAi MAX (13778150; Life Technologies), and LysoTracker Deep Red (L12492; Thermo Fisher Scientific).
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