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3 protocols using zeocin ant zn 1

1

Comprehensive Chemical Reagents for Cell Studies

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The following chemicals and reagents were used in this study: torin1 (sc-396760, Santa Cruz, Dallas, TX), BafA1 (tlrl-baf1, InvivoGen, San Diego, CA), poly-l-lysine (P4707-50ML, MilliporeSigma), Lipofectamine 3000 (L3000008, Thermo Fisher Scientific), nucleofector kit T (VACA-1002, Lonza, Basel, Switzerland), polybrene (H9268-5G, MilliporeSigma), normocin (ant-nr-1, InvivoGen), puromycin (ant-pr-1, InvivoGen), blasticidin (ant-bl-1, InvivoGen), zeocin (ant-zn-1, InvivoGen, San Diego, CA), normal goat serum (NGS; ab7481, Abcam, Cambridge, United Kingdom), Phusion High-Fidelity DNA polymerase (M0530L, NEB, Ipswich, MA), T5 exonuclease (M0363S, NEB, Ipswich, MA), and Taq DNA ligase (M0208L, NEB, Ipswich, MA).
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2

Culturing hTERT-RPE1 and HCT116 Cells

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hTERT-immortalized retinal pigmented epithelial cells (hTERT-RPE1, RRID:CVCL_4388) were cultured in standard growth conditions (5% CO2, 37°C) in complete media (1:1 Dulbecco Modified Eagle Medium / Nutrient Mixture F12 supplemented with 10% fetal bovine serum (FBS) (F9665, Merck), 1% penicillin-streptomycin (15140122, Life Technologies) and 0.123% sodium bicarbonate (S8761, Sigma-Aldrich)). hTERT-RPE1 Flp-In T-REx were grown under similar conditions, including 100 μg/ml Zeocin (ant-zn-1, InvivoGen) and 10 μg/ml Blasticidin (ant-bl-1, InvivoGen). hTERT-RPE1 Flp-In T-REx cells expressing RAD51 separation-of-function variants were generated by transfecting cells with pDEST_FRT_TO plasmids containing FLAG, FLAG-RAD51-WT, FLAG-RAD51-K133R, FLAG-RAD51-T131P or FLAG-RAD51-II3A. Selection was done in 500 μg/ml G418 (G8168, Sigma-Aldrich), and maintained in 200 μg/ml G418 and 10 μg/ml Blasticidin. To induce variant expression, cells were incubated with complete media containing 1 μg/ml doxycycline (D9891, Sigma Aldrich) for at least 24 hours. HCT116 cells were cultured in standard growing conditions (5% CO2, 37°C) in McCoy’s 5A medium (26600080, Gibco) supplemented with 10% FBS and 1% penicillin-streptomycin. HeLa cells were cultured in Dulbecco’s Modified Eagle’s Medium (DMEM) with high glucose (D6429, Sigma Aldrich) with 10% FBS and 1% penicillin-streptomycin.
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3

KRAS Mutant Flp-In T-REx 293 Cell Lines

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HEK293T and Flp-In T-REx 293 Cell Line (parental line; R78007; Thermo Fisher Scientific) were cultured in DMEM (high glucose, #12440-53; Gibco) supplemented with 10% FBS (#10500-64; Gibco), 2 mM L-glutamine (G7513; Sigma-Aldrich), 100 μg/ml Zeocin (ant-zn-1; InvivoGen), 15 μg/ml blasticidin (ant-bl-1; InvivoGen) at 37°C in a humidified 5% CO2 atmosphere. The stable transfected Flp-In T-REx 293 cell lines (KRAS WT-APEX2, KRAS G12D-APEX2, KRAS G13D-APEX2, KRAS Q61H-APEX2, KRAS WT-GFP, KRAS G12D-GFP, KRAS G13D-GFP, KRAS Q61H-GFP, GFP only) were cultured in the same medium and selected by adding 100 μg/ml of hygromycin B (ant-hg-1; InvivoGen) to the media. For the induction of the stable transfected Flp-In T-REx 293 cell lines, 1 μg/ml tetracycline was added to the media.
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