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Uhplc q orbitrap ms

Manufactured by Thermo Fisher Scientific
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The UHPLC/Q-Orbitrap-MS is a high-performance liquid chromatography (UHPLC) system coupled with a quadrupole-Orbitrap mass spectrometer. It is designed to provide accurate and sensitive analysis of complex samples. The system combines the separation capabilities of UHPLC with the high-resolution and mass accuracy of the Orbitrap mass analyzer.

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2 protocols using uhplc q orbitrap ms

1

UHPLC-MS-Based Metabolite Profiling

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The qualitative analysis was performed on a UHPLC/Q-Orbitrap-MS (Thermo Fisher Scientific, San Jose, CA, USA) with chromatographic separation achieved using an ACQUITY UPLC® BEH C18 (2.1 × 100 mm, 1.7 µm, Waters, Milford, MA, USA) at 40°C. The mobile phase system was composed of 0.1% formic acid aqueous solution (v/v) (A) and methanol (B) at 0.3 mL min−1, which was performed according to following optimized gradient program: 0–5 min, 3%–9% B; 5–9 min, 9%–15% B; 9–11 min, 15%–17% B; 11–15 min, 17%–27% B; 15–18 min, 27%–28% B; 18–26 min, 28%–50% B; 26–31 min, 50%–66% B; 31–35 min, 66%–74% B; and 35–36 min, 74%–3% B. The mass spectrometer was carried out in both positive and negative ion modes with centroided MS and MS2 spectra recorded from 100 to 1500 m/z in full MS and dd-MS2 (TopN) modes at a resolution of 70000 and 17500, respectively. The maximum injection time was set at 50 and 100 ms for MS1 and MS2, respectively. The automatic gain control (AGC) target of MS1 and MS2 was 3e6 and 1e5, respectively. The optimal MS parameters were as follows: spray voltage, −2.5 kV in negative ion mode and 3.5 kV in positive ion mode; sheath gas flow rate, 35 Arb; aux gas flow rate, 10 Arb; capillary temperature, 350°C; aux gas heater temperature, 350°C; collision energy at 20, 40, and 60 eV. All the data were acquired and processed by the Thermo Scientific™ Xcalibur™ system.
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2

Targeted Metabolite Screening in Lasianthus

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The MDF algorithm was developed to achieve high specificity in the screening of targeted components from both negative and positive ions modes in a full-scan spectrum of lasianthus. In essence, it was constructed by the m/z values of the compounds in lasianthus, however, few studies on the chemical constituents of lasianthus were done. Therefore, a total of 80 compounds were identified from the QC sample by using Compound Discoverer™ software (Thermo Scientific, San Jose, CA, USA) as a database initially. The integer and decimal parts of m/z values from 80 compounds were located at the x-axis and y-axis to establish the scatter plot, and six boundaries were plotted by using the six outermost compounds. The corresponding ‘‘IF’’ function could be calculated for each boundary, and the mass defect tolerance was set as ± 0.01 Da. The “IF” function was utilized to screen target ions from the full scan MS data. The MS data were recorded by UHPLC/Q-Orbitrap MS and processed by SIEVE software (Thermo Fisher Scientific) to yield a list containing the m/z values of the picked ions (metabolic features). Finally, the precursor ions list was constructed by target ions for the obtaining of further fragmentation.
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