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Mp 16

Manufactured by StataCorp

The MP 16.1 is a compact, high-performance laboratory instrument designed for a variety of applications. It features a 16-position sample handling system, enabling efficient processing and analysis of multiple samples. The core function of the MP 16.1 is to provide a reliable and versatile platform for various laboratory procedures, including sample preparation, separation, and detection.

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8 protocols using mp 16

1

Predictors of Bias in Systematic Reviews

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Free-text comments on non-standard use of ROBINS-I were grouped into categories and summarized. For each review, we calculated the proportion of judgments in each RoB category and the range of categories used.
For reviews that did not report overall RoB judgments, inferred overall judgments were calculated by taking the highest judgment in an individual domain, in accordance with the ROBINS-I guidance.[4] (link) For reviews that reported both domain-specific and overall judgments, the inferred overall judgment was compared to the reported judgment to identify instances where they differed.
We considered the following explanatory variables as potential predictors of RoB judgments: methodological quality as assessed using AMSTAR 2, whether RoB assessment was performed in duplicate, whether the authors reported industry funding or competing interests, and whether the review included RCTs.
Since the RoB assessments within the same review were expected to be similar, multilevel regression was used. The overall (or inferred overall) RoB judgments were treated as an ordinal outcome, and a separate generalized ordered logit model was fitted for each predictor with a review-level random intercept. Results were presented as odds ratios and population-average marginal predicted probabilities. Analyses were carried out in Stata MP/16.1[23] using the gllamm command[24] .
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2

Comparative statistical analysis of survey responses

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Appropriate statistical tests were chosen to perform the response comparisons between groups; both parametric and non-parametric tests were employed. Due to the ordinal nature of the response variables, we perform a non-parametric pairwise multiple comparison50 (link) and adjust the false discovery rate using the Benjamini–Hochberg stepwise adjustments. We also report the results of the Kruskal–Wallis rank test of the hypothesis that responses from different fields are from the same population. We employed both mean comparison t-test and the non-parametric Wilcoxon rank-sum for comparison between US and non-US responses. For US and non-US difference within fields, we implemented the Bonferroni correction to account for multiple comparison by inflating the significance cut-off by five-fold. To calculate the effect size for these comparisons, we follow the transformation of Cohen’s d for ordinal data proposed by51 (link), where d =2*z/n . Exact p-values (two-tailed) are reported. Statistical analyses were performed using Stata MP 16.1.
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3

Missing Data Imputation in UKHLS

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We used multiple imputations with chained equations to address any missing data between an individual's first and last appearance in UKHLS under a missing at random assumption (Desai, Esserman, Gammon, & Terry, 2011 (link); White, Royston, & Wood, 2011 (link)). Observations with high missingness (those missing >9 of the 22 variables required for analysis, totalling 12.7% of all observations) were dropped. Due to the need for lagged data on time-varying confounders, the first wave of data for each individual only contributed information about baseline confounding characteristics. Twenty imputed datasets were then created with all variables including exposure, mediator, outcome, and lagged time-varying confounders.
Gender, age, wave, and number of children were used as imputation variables; due to issues achieving model convergence missing observations for region (n = 211, 0.0007%) were dropped. Poverty and caseness variables were dichotomised after imputation. Online Table S1 in the supplementary appendix details the regression models used to impute each included variable.
Stata MP 16.1 was used for all analyses. Graphs were generated in R using ggplot2.
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4

Clonotypic DNA Abundance in CSF vs Plasma

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Patients’ clinical characteristics were tabulated; all values of continuous variables (including DNA concentrations) were summarized as medians and ranges or interquartile ranges (IQR). Concentrations and frequencies of the clonotypic DNA, correlation between DNA abundance and WBC or RBC in the CSF samples, or between CSF and paired plasma samples were compared between groups using the Somers’ D rank statistic. Jackknife standard errors were adjusted to account for within-patient clustering in all analyses that included multiple DNA sequences from each patient or from paired CSF/plasma samples.31 The cumulative risk of CNS recurrence in the prospective cohort was plotted using Kaplan-Meier analysis and compared using the log-rank test, as there were no competing events recorded. We censored patients’ follow-up in cases with allogeneic stem cell transplantation or chimeric antigen receptor T-cell infusion. All analyses were conducted using MP16.1 (Stata, College Station, TX).
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5

Missing Data Imputation in UKHLS

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We used multiple imputations with chained equations to address any missing data between an individual’s first and last appearance in UKHLS under a missing at random assumption (Desai, Esserman, Gammon, & Terry, 2011 (link); White, Royston, & Wood, 2011 (link)). Observations with high missingness (those missing >9 of the 22 variables required for analysis, totalling 12.7% of all observations) were dropped. Due to the need for lagged data on time-varying confounders, the first wave of data for each individual only contributed information about baseline confounding characteristics. Twenty imputed datasets were then created with all variables including exposure, mediator, outcome, and lagged time-varying confounders.
Gender, age, wave, and number of children were used as imputation variables; due to issues achieving model convergence missing observations for region (n = 211, 0.0007%) were dropped. Poverty and caseness variables were dichotomised after imputation. Online Table S1 in the supplementary appendix details the regression models used to impute each included variable.
Stata MP 16.1 was used for all analyses. Graphs were generated in R using ggplot2.
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6

Analyzing Oxidative Stress Biomarkers

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Data analysis with Shapiro-Wilk for normal data and Bartlett's test for equal variances was done. After that Kruskal Wallis test was used for HNE and the analysis of variance (ANOVA) for GSH, followed by post hoc Bonferroni test. A 95% confidence level (P < 0.05) was considered significant. A Spearman's rank test was also done to test the correlation between the GSH and HNE parameters. SPPS v 20.0 was used to analyze data of 4-HNE and GSH, and Stata MP 16 was used for testing the correlation among the two variables.
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7

Factors Associated with Hematological Changes

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Data were entered into Excel and analyzed using Stata MP 16 software. Quantitative variables were described in terms of mean and standard deviation. For qualitative variables, a description in terms of number of participants and percentage of data completed was performed. Data were analyzed by estimation of difference in proportion according to a 95% confidence interval. Groups were compared using chi-square test or Fisher exact test for categorical variables and Student's t test for continuous variables when these tests were applicable. Otherwise, nonparametric tests (Mann–Whitney and Kruskall-Wallis) were used.
A multivariate analysis was performed to study the factors that could be associated with thrombocytopenia and anemia at inclusion. The study of the variation of hematological and biochemical parameters between D0 and D7 was done by pairwise analysis using the Bonferroni test. Statistical significance for all tests was set at 0.05 (p value <0.05 two side).
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8

Assessing Postoperative Pain in Animals

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All data collected were entered into a database created with an Excel spreadsheet, and data analysis was performed using Stata MP16 software. Continuous variables were described as median and interquartile range (IQR) and as media on figures, and categorical variables as proportions. The skewness and kurtosis test was used to evaluate the normality of continuous variables, and a normalisation model was used for those not normally distributed. One‐way analysis of variance (ANOVA) was used to compare continuous variables between groups, with Bonferroni correction to compare two groups at a time. The ANOVA for repeated measures test was used to compare continuous variables between groups and detection time. The Fisher's exact test was used to compare proportions between groups. To assess the relation between the difference between t24 and t0 of NAS and CMPS‐SF scores and age, weight and groups multivariate linear regression models were built; correlation coefficients were reported with the indication of 95% confidence interval (95% CI). For all tests, a two‐sided p‐value < 0.05 was considered statistically significant.
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