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11 protocols using p plcγ1

1

Western Blot Analysis of HUASMC Proteins

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Extraction of HUASMC cytoplasmic and membrane proteins was performed according to a previously published method.12 The total protein was extracted using CelLytic MT cell lysis buffer (Sigma). After the samples underwent 10% sodium dodecyl sulfate-polyacrylamide gel electrophoresis, they were transferred to a nitrocellulose membrane (Bio-Rad, Hercules, CA, USA) and incubated with the following primary antibodies: PLC-γ1, P-PLC-γ1, IP3R and P-IP3R (1:1000; all from Cell Signaling, Danvers, MA, USA), PKC-α, (1:200, Life Technologies), type III procollagen (COL3A1), type I collagen (COL1A) and β-actin (1:1000, all from Santa Cruz). Following incubation at 4 °C overnight, the membrane was washed and incubated with Dye 700-fluorescein-conjugated anti-rabbit second antibody (1:4000) or IR Dye 800-fluorescein-conjugated anti-mouse second antibody (1:5000) (both from Bio-Rad) at room temperature for 1 h. After the membranes were washed with Tris-buffered saline with Tween-20, the bands were scanned using an Odyssey Image Scanning System (LI-COR Biosciences, Lincoln, NE, USA). Quantitative analysis of the bands was performed using a Quantity One System (Bio-Rad, Hercules, CA, USA).
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2

Detailed Immunostaining and Inhibitor Protocol

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Antibodies against FN (Cat#15613-1-AP), COL1A1 (Cat#67288-1-lg), α-SMA (Cat#55135-1-AP, Cat#67735-1-AP), FGFR1 (Cat#60325-1-lg), CD31 (Cat#60287-1-lg), CD45 (Cat#11265-1-lg), EpCAM (Cat#60287-1-lg), Vimentin (Cat#10366-1-AP) and GAPDH (Cat#60004-1-lg) were purchased from Proteintech (Rosemont, IL, USA). Antibodies against p-EGFR (Cat#3777S), EGFR (Cat#4267), p-VEGFR2 (Cat#2478), VEGFR2 (Cat#9698), PDGFRβ (Cat#3169), p-PLCγ1 (Cat#2821), PLCγ1 (Cat#5690), p-GAB1 (Cat#12745), GAB1 (Cat#3232), p-SHC (Cat#2434), SHC (Cat#2432), p-AKT (Cat#4060), AKT (Cat#9272), p-ERK1/2 (Cat#4370), ERK1/2 (Cat#4695), p-STAT3 (Cat#4113), STAT3 (Cat#9139), GRB2 (Cat#3972), GST (Cat#2642) were purchased from Cell Signaling Technology (Danvers, MA, USA). Antibodies against pY (Cat#EPR16871), p-PDGFRβ (Cat#ab248657), p-FGFR1 (Cat#ab59194), α-SMA (Cat#ab124964), pS/pT (Cat#ab117253) and IgG (Cat#EPR25A and Cat#ab37415) were purchased from Abcam (Cambridge, MA, USA). Bleomycin, nintedanib and PHPS1 were purchased from Targetmol (Boston, MA, USA).
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3

Antibody Sourcing for Cell Signaling

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The anti-EGFR, -Akt, -pAkt, -STAT3, -pSTAT3, -Erk1/2, -pErk1/2, -PLC-γ1, -pPLC-γ1, -YB-1, -β-catenin, -Lamin B1, and -β-actin antibodies were purchased from Cell Signaling Technology, Inc. (Danvers, MA, USA). The anti-Migfilin antibody was a gift from Dr. Cary Wu (University of Pittsburgh, Pittsburgh, PA, USA). The HRP-conjugated anti-rabbit and anti-mouse antibodies, Rhodamine (TRITC)-conjugated Affinipure goat anti-rabbit IgG antibody, Alexa Fluor 488-conjugated Affinipure goat anti-mouse IgG antibody, and 4′,6′-diamidino-2-phenylindole (DAPI) were purchased from Sigma (St. Louis, MO, USA).
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4

VEGFR-2 Signaling Pathway Analysis

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Serum starved PAE-KDR cells were incubated for 10 min with 1.5 nM VEGF (in all experiments VEGF-A165 was used) with or without 30 min pretreatment with scFvs. Cells were lysed with lysis buffer (50 mM Tris (pH 7.5), 100 mM NaCl, 0.5% (w/v) Triton X-100) supplemented with protease inhibitor cocktail (Complete Mini EDTA-free, Roche) and phosphatase inhibitors (200 μM Na3VO4, 20 μM phenylarsine oxide). Lysates were diluted with 5× loading buffer (0.25 M Tris-HCl pH 6.8, 0.5 M DTT, 10% SDS, 50% glycerol, 0.5% bromophenol blue). Samples were boiled at 50 °C for 30 min, and resolved by 7% SDS PAGE, transferred to PVDF membranes (GE Healthcare, Piscataway, NJ, USA), and immunodecorated with primary antibodies (dilution 1:1000), followed by secondary alkaline phosphatase-coupled antibodies (1:10000). Immunoblots were developed with Novex AP Chemiluminescent Substrate (Invitrogen, Carlsbad, CA, USA). Amersham Imager 600 (GE) was used for analysis. Antibodies used were as follows: pVEGFR-2 (2478, Cell Signaling), tVEGFR-2 (2479, Cell Signaling), pPLCγ1 (2821, Cell Signaling), tPLCγ1 (2822, Cell Signaling), pAKT (4060, Cell Signaling), tAKT (4051, Cell Signaling), p38 (4631, Cell Signaling), and tp38 (9212, Cell Signaling). Protein marker used was PageRuler™ Plus Prestained Protein Ladder, 10 to 250 kDa (26619, ThermoFisher, Waltham, MA, USA).
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5

Protein Analysis of CD4+ T Cells

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For protein analysis of tissues, tissue was suspended in a Triton lysis buffer, homogenized and ELISA was performed. CD4+ T cells were lysed and protein detected by western blot as per Hedl et al. (2016) (link) with antibodies to: IRF5 (Abcam, for mouse) or (E1N9G, Cell signaling Technology, for human), p-IRF5 (ThermoFisher Scientific), p-ERK, ERK, p-ZAP70, ZAP70, p-PLCγ1, PLCγ1, p-Lck, Lck, p-p38, SLP76, and VAV1, all from Cell Signaling, and p38, p-JNK, JNK all from Santa Cruz. IRF5 or VAV1 was immunoprecipitated from CD4+ T cells with antibodies to IRF5 (Abcam) or VAV1 (Cell Signaling Technology) bound to protein G or protein A Sepharose (MilliporeSigma). Immunoprecipitates were blotted for the antibodies as above. GAPDH antibodies ([mouse], MilliporeSigma; [rabbit], Cell Signaling Technology), α-tubulin, TATA binding protein [TBP] (Santa Cruz Biotechnology) or the respective protein in whole cell lysate served as loading controls. For intracellular expression by flow cytometry, cells were fixed with Lyse/Fix Buffer (BD Biosciences) for 15 min, permeabilized for 1h with Perm Buffer III (BD Biosciences), washed and then stained with the indicated antibodies. Isotype controls were included for treated cells.
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6

Western Blot Analysis of Signaling Pathways

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Whole cell lysates were prepared as described previously.13 Primary antibodies used were phosphorylated (p‐)p38 (Thr180/Tyr182), heat shock protein (p‐HSP)27 (Ser78), HSP27, p‐ERK1/2 (Thr202/Tyr204), p‐JNK1/2/3 (Thr183/Tyr185), protein kinase B (p‐AKT) (Ser473), p‐Src (Tyr416), focal adhesion kinase (p‐FAK) (Tyr397), FAK, p‐Smad2 (Ser465/467), Smad2/3, p‐p65 (Ser536), and phospholipase Cγ1 (p‐PLCγ1) (Tyr783) (Cell Signaling Technology, Beverly, MA, USA), antibodies against α‐tubulin, FLAG (Sigma‐Aldrich, St. Louis, MO, USA), and antibodies against p38α, ERK1, JNK1, AKT1, p65 (Santa Cruz Biotechnology, Santa Cruz, CA, USA). Antibody against human CTGF was purchased from PeproTech. Appropriate HRP‐conjugated antibodies were used as secondary antibodies.
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7

Signaling Pathway Monitoring in Cells

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IMDM, penicillin, and streptomycin were purchased from Hyclone (Logan, UT, USA). Bovine serum albumin, PMA, U73122, PD98059, PF-02341066, and A23187 were purchased from Sigma (St. Louis, MO, USA). Anti-mouse IL-6 antibody and biotinylated anti-mouse IL-6 antibody were purchased from BD Biosciences (BD Pharmingen, San Diego, CA, USA). p-STAT3, STAT3, p-JAK, JAK, p-PLCγ1, PLCγ1, p-AKT, AKT, p-ALK, ALK, β-actin, p-ERK, ERK, p-JNK, JNK, p-p38, and p38 antibodies were all purchased from Cell Signaling Technology, Inc. (Danvers, MA, USA). TNF-α, CSF2, IL-6, IL-6R, IL-8, and GAPDH oligonucleotide primers were purchased from Bioneer Corp. (Daejeon, Korea).
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8

Immunoprecipitation and Immunoblotting of T-Cell Signaling Proteins

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Antibodies against the indicated proteins were purchased from Cell Signaling Technology: Lck (Cat. 2752), pSrc (Cat. 2101), pZAP70 (Y319, Cat. 2717), pZAP-70 (Y493, Cat. 2704), ZAP-70 (Cat. 3165), pErk1/2 (Cat. 9101), Erk1/2 (Cat. 4695), GAPDH (Cat. 5174), Calnexin (Cat. 2679), LAT (Cat. 9166), pLAT (Cat. 3581), PLC-γ1 (Cat. 2822), pPLCγ1 (Cat. 2821), SLP-76 (Cat. 70896) and GRB2 (Cat. 3972). Antibodies against pSLP-76 were purchased from Invitrogen, Cat. PA5-39759. The following antibodies were used for immunoprecipitation: anti-Lck clone 3A5 (EMD Millipore, Cat. 05-435) and anti-ZAP-70 clone 35A.2 (EMD Millipore, Cat. 05-253). The following reagents were used: Anti-human CD3 antibody (OKT3) (eBioscience, Cat. 14-0037-82), Pierce Protein A agarose beads (Thermo Scientific, Cat. 20333), Hydroxylamine hydrochloride (Sigma, Cat.159417), Methyl methanethiosulfonate (MMTS) (Sigma, Cat. 208795), n-Dodecyl β-D-maltoside (DDM) (Sigma, Cat. D4641), EZ-Link HPDP-biotin (Thermo Scientific, Cat. 21341), Streptavidin agarose beads (Invitrogen, S951), Poly-L-lysine (Sigma, Cat. P4707), Phosphatase Inhibitor Cocktail 2 (Sigma, Cat. P5726), Complete Protease Inhibitor Cocktail tablets (Roche, Cat. 11836170001) and ML211 (Cayman Chemical, Cat. 17630).
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9

DOPAL-Mediated Endothelial Cell Signaling

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DOPAL (Purity: ≥90%) was acquired from Cayman Chemical (Ann Arbor, MI, USA). MOPAL (99%), MOPET (99%), IPy (≥97%), IPA (≥99.0%), ILA (99%), IBA (≥99.0%), dimethyl sulfoxide (DMSO), and bicinchoninic acid (BCA) were obtained from Sigma–Aldrich (St. Louis, MO, USA).
HUVECs, endothelial cell growth medium-2 (EGM-2) and endothelial basal medium (EBM) were obtained from Lonza (Slough, UK). Recombinant human VEGFA165 was bought from R&D Systems (Minneapolis, MN, USA).
A PathScan® Phospho-VEGFR-2 (Tyr1175) sandwich ELISA kit was purchased from Cell Signaling Technology (Hitchin, UK). NuPAGE lithium dodecyl sulfate (LDS) sample buffer and NuPAGE DTT and 4–12% Bis-Tris gels were obtained from Invitrogen (Loughborough, UK). Nitrocellulose 0.2 µm membranes was acquired from Bio-Rad (Hercules, CA, USA); p-PLCγ1, PLCγ1, p-Akt, Akt, p-eNOS, eNOS from Cell Signaling Technology (Danvers, MA, USA) and SuperSignal West Pico chemiluminescent substrate from Thermo Scientific (Hitchin, UK).
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10

HPLC Analysis of Bioactive Compounds

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Standard samples (chlorogenic acid and γ-aminobutyric acid (GABA)) for high-performance liquid chromatography (HPLC), 3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide (MTT) solution, lipopolysaccharide (LPS), vitamin C, and dexamethasone were obtained from Sigma-Aldrich (St. Louis, Missouri, USA). Recombinant human interferon (IFN)-γ and tumor necrosis factor (TNF)-α were obtained from BioLegend (San Diego, CA, USA). Fetal bovine serum (FBS), Dulbecco’s modified Eagle medium (DMEM), and Roswell Park Memorial Institute (RPMI) 1640 medium were purchased from Gibco BRL (Rockville, MD, USA). Enzyme-linked immunosorbent assay (ELISA) kit for histamine was obtained from Abcam (Cambridge, UK) for histamine. Antibodies against p-p38, p38, p-ERK, ERK, p-JNK, JNK, p-Lyn, Lyn, p-Syk, Syk, p-Fyn, Fyn, p-PLCγ1, PLCγ1, p-PKCδ, PKCδ, NF-κB p65, Lamin B, Nrf2, HO-1, NQO1, iNOS, COX-2, and β-actin were purchased from Cell Signaling Technology (Danvers, MN, USA) or Santa Cruz (Dallas, TX, USA).
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