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Pcr mycoplasma detection set

Manufactured by Takara Bio
Sourced in Japan, United States, Germany

The PCR Mycoplasma Detection Set is a laboratory equipment designed for the detection of mycoplasma contamination in cell cultures. It utilizes the polymerase chain reaction (PCR) technique to amplify specific DNA sequences, allowing for the identification of the presence of mycoplasma in the sample.

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44 protocols using pcr mycoplasma detection set

1

Cell Line Characterization and Demethylation

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Prostate cell lines, LNCaP, 22RV1, DU145, PC-3 (malignant), and RWPE (benign) were used for in vitro studies. LNCaP and 22Rv1 cells were grown in RPMI 1640, whereas DU145 and PC-3 cells were maintained in MEM and 50% RPMI-50% F-12 medium, while RWPE was cultured in Keratinocyte-SFM, containing human recombinant Epidermal Growth Factor 1-53 and Bovine Pituitary Extract (GIBCO, Invitrogen, Carlsbad, CA, USA), respectively. HEK293Ta were maintained in DMEM. All basal culture media were supplemented with 10% fetal bovine serum and 1% penicillin/streptomycin (GIBCO, Invitrogen, Carlsbad, CA, USA). Cells were maintained in an incubator at 37 °C with 5% CO2. All cell lines were G-banding karyotyped (for validation) and routinely tested for Mycoplasma spp. contamination (PCR Mycoplasma Detection Set, Clontech Laboratories).
One micromolar of the DNA methyltransferases inhibitor 5-aza-2-deoxycytidine (5-Aza-CdR; Sigma-Aldrich, Schnelldorf, Germany) was used for DNA demethylation. Cells were harvested and RNA extracted after 72-h exposure to the demethylating agent.
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2

Bladder Cancer Cell Lines Cultivation

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The BC cell lines 5637 and J82 were obtained from American Type Culture Collection (ATCC; Manassas, VA, USA). Both cell lines were derived from transitional cell carcinoma of the human urinary bladder, with 5637 being classified as grade II and J82 as grade III (stage pT3) [20 (link)]. BC cell lines were cultured in MEM to ensure optimal cell growth and maintenance of epithelial cell characteristics. The culture medium was prepared as indicated by the manufacturer and supplemented with 10% FBS and 100 units·mL−1 penicillin/100 μg·mL−1 streptomycin. All cell lines were routinely tested for Mycoplasma spp. contamination (PCR Mycoplasma Detection Set, Clontech Laboratories).
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3

Establishment and Characterization of Prostate Cancer Cell Lines

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PCa cell lines LNCaP and PC-3 were kindly provided by Prof. Ragnhild A. Lothe from the Department of Cancer Prevention at the Institute for Cancer Research, Oslo, Norway, whereas DU145 was kindly provided by Professor Fátima Baltazar at ICVS, University of Minho, Braga, Portugal and 22Rv1 cells were kindly provided by Dr. David Sidransky at the Johns Hopkins University School of Medicine, Baltimore, MD, USA. LNCaP and 22Rv1 cells were grown in RPMI 1640, DU145 cells were maintained in MEM and PC-3 cells were grown in 50% RPMI-50% F-12 medium (GIBCO, Invitrogen, Carlsbad, CA, USA). All basal culture media were supplemented with 10% fetal bovine serum and 1% penicillin/streptomycin (GIBCO, Invitrogen, Carlsbad, CA, USA). Cells were maintained in an incubator at 37ºC with 5% CO2. All PCa cell lines were karyotyped by G-banding (for validation purposes) and routinely tested for Mycoplasma spp. contamination (PCR Mycoplasma Detection Set, Clontech Laboratories). Hydralazine was purchased from Sigma (Sigma-Aldrich, St. Louis, MO, USA) dissolved in PBS (GIBCO, Invitrogen, Carlsbad, CA, USA). For control purposes, cell lines were exposed to the vehicle of the drug (PBS).
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4

Prostate Cancer Cell Line Maintenance

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Human PCa cell lines LNCaP, PC3 and VCaP were kindly provided by Prof. Ragnhild A. Lothe from the Department of Cancer Prevention at the Institute for Cancer Research, Oslo, Norway, and DU145 was offered by Prof. Fátima Baltazar from the Life and Health Sciences Research Institute at the University of Minho, Braga, Portugal. All cell lines were maintained in recommended medium, supplemented with 10% Fetal Bovine Serum (FBS; GIBCO, Invitrogen, Carlsbad, CA, USA) and 1% penicillin/streptomycin solution (GIBCO, Invitrogen), at 37°C;C and 5% CO2. PCa cell lines were karyotyped by G-banding (for validation purposes) and routinely tested for Mycoplasma spp. contamination (PCR Mycoplasma Detection Set, Clontech Laboratories Inc., Mountain View, CA, USA).
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5

Culturing Prostate Cancer Cell Lines

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Three prostate cell lines were obtained from ATCC—American Type Culture and included in the study: PNT2 (benign cell line), LNCaP (hormone-sensitive), and PC3 (castration-resistant). All cell lines were cultured using recommended medium supplemented with 10% of fetal bovine serum and 1% of penicillin–streptomycin (GIBCO, Invitrogen, Carlsbad, CA, USA) and maintained at 37 °C and 5% CO2 in a humidified chamber. All PCa cell lines were routinely tested for Mycoplasma spp. contamination (PCR Mycoplasma Detection Set, Clontech Laboratories Inc., Mountain View, CA, USA).
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6

Cell Culture of Prostate Cancer Lines

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PCa cell lines LNCaP, 22RV1, DU145 and PC-3 were used for in vitro studies. LNCaP and 22Rv1 cells were grown in RPMI 1640, whereas DU145 and PC-3 cells were maintained in MEM and 50% RPMI-50% F-12 medium (GIBCO, Invitrogen, Carlsbad, CA, USA), respectively. All basal culture media were supplemented with 10% fetal bovine serum and 1% penicillin/streptomycin (GIBCO, Invitrogen, Carlsbad, CA, USA). Cells were maintained in an incubator at 37ºC with 5% CO2. All cell lines were G-banding karyotyped (for validation) and routinely tested for Mycoplasma spp. contamination (PCR Mycoplasma Detection Set, Clontech Laboratories).
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7

Prostate Cell Line Cultivation for Assays

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Benign prostate cell line RWPE-1 and PCa cell lines 22Rv1, LNCaP and VCaP, which are androgen receptor (AR) positive, as well as PCa cell lines DU145 and PC-3, characterized as AR negative, were grown for in vitro assays. RWPE-1 cells were maintained in K-SFM growth medium supplemented with Bovine pituitary extract + Human recombinant epidermal growth factor and 1% penicillin/streptomycin. 22Rv1 and LNCaP cells were grown in RPMI 1640, DU145 and VCaP cells were maintained in MEM and PC-3 cells were grown in 50% RPMI-1640 + 50% F-12 medium (GIBCO®). The culture media of PCa cell lines were supplemented with 10% fetal bovine serum and 1% penicillin/streptomycin (GIBCO®). Cells were grown in an incubator at 37 °C with 5% CO2. All prostate cell lines were tested for Mycoplasma spp. contamination (PCR Mycoplasma Detection Set, Clontech Laboratories). Cells later harvested for protein and RNA extraction.
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8

DNA Demethylation in Prostate Cancer Cells

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LNCaP cells were grown in RPMI 1640, DU145 cells were maintained in MEM and PC-3 cells were grown in 50% RPMI-50% F-12 medium (GIBCO, Invitrogen, Carlsbad, CA, USA). All basal culture media were supplemented with 10% fetal bovine serum and 1% penicillin/streptomycin (GIBCO, Invitrogen, Carlsbad, CA, USA). Cells were maintained in an incubator at 37 °C with 5% CO2. All PCa cell lines were routinely tested for Mycoplasma spp. contamination (PCR Mycoplasma Detection Set, Clontech Laboratories).
To reverse DNA methylation effect in the cell lines, we used 1 μM of the DNA methyltransferases inhibitor 5-aza-2-deoxycytidine (5-Aza-CdR; Sigma-Aldrich, Schnelldorf, Germany) alone or in combination 0.5 μM histone deacetylase inhibitor trichostatin A (TSA; Sigma-Aldrich, Schnelldorf, Germany). After 72 h, cells were harvested and RNA extracted.
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9

Prostate Cancer Cell Line Characterization

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The cell lines used in this study were VCaP, NCI-H660, LNCaP, MDA-PCa-2b, PC3, DU145, 22Rv1 and PNT2. DU145 cells were acquired from the German Resource Centre for Biological Material (DSMZ, Braunschweig, Germany) and grown at regular growth conditions in RPMI-1640 medium (GIBCO®, Invitrogen, Carlsbad, CA, USA), supplemented with 10% fetal bovine serum (FBS, GIBCO®) and 1% penicillin/streptomycin (GIBCO®). The origin and growth conditions of the remaining cell lines were previously described [43 (link),44 (link)]. Conventional G-banding karyotyping was previously performed to confirm cell identity [44 (link)]. All prostate cell lines were routinely tested for Mycoplasma spp. contamination using the PCR Mycoplasma Detection Set (Clontech Laboratories Inc.).
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10

Prostate Cell Line Characterization

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Human PCa cell lines available in our lab (LNCaP, 22Rv1, DU145 and PC-3) and a non-malignant prostate cell line (RWPE-1, kindly provided by Prof. Margarida Fardilha, University of Aveiro, Portugal) were used in this study. All cell lines were cultured using recommended medium supplemented with 10% of fetal bovine serum and 1% of penicillin-streptomycin (FBS; GIBCO, Invitrogen, Carlsbad, CA, USA) and maintained at 37°C and 5% CO2 in a humidified chamber. All cell lines were routinely tested for contamination by Mycoplasma spp. using a specific multiplex PCR (PCR Mycoplasma Detection Set, Clontech Laboratories Inc., Mountain View, CA, USA).
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