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57 protocols using ab50887

1

Protein Expression Analysis Protocol

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The cell lysates were collected, and 30 mg protein of each sample was separated using 10% SDS-PAGE. The protein was then electrotransferred onto Polyvinylidene Fluoride (PVDF) membrane (Millipore, Boston, MA, USA). The PVDF membrane was sealed in 10% skimmed milk. Then the membrane was incubated with primary antibodies, including anti-TNC (Abcam, ab108930, 1:1000 dilution), anti-GAPDH (Abcam, ab181602, 1:10,000 dilution), and anti-ERK (Abcam, ab184699, 1:1000 dilution)), anti-p-ERK (Abcam, ab201015, 1:1000 dilution), anti-MMP9 (Abcam, ab76003, 1:1000 dilution), anti-MMP2 (Abcam, ab92536, 1:1000 dilution), anti-E-cadherin (Abcam, ab1416, 1:1000 dilution), anti-N-cadherin (Abcam, ab18203, 1:1000 dilution), anti-vimentin (Abcam, ab92547, 1:1000 dilution), anti-snail (Abcam, ab216347, 1:1000 dilution), anti-clumping (Abcam, ab27568, 1:1000 dilution) and anti-TWIST1 (Abcam, ab50887, 1:1000 dilution) overnight. Then the membrane and horseradish peroxidase-conjugated secondary antibody (Abcam AB6721, 1:10,000 dilution) were incubated for 2 h at room temperature. Chemiluminescence detection reagent (Millipore, Boston, MA, USA) was used to visualize protein bands.
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2

DCIS and Early Breast Cancer Profiles

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Patients with early‐stage breast cancer were identified from the London Breast Cancer Database on the basis of having either DCIS only (stage 0) or DCIS with an associated invasive component (stage I; ≤ 2 cm, and either pN0 or pN0mi). Cohort 1 consisted of 186 patients with low‐, intermediate‐ or high‐grade DCIS with no invasion or early invasion (stage 0 or stage I). Cohort 2 consisted of 118 patients with non‐high‐grade DCIS with the aforementioned characteristics, with either no invasion or early invasion (stage 0 or stage I). Clinicopathological variables for cohort 1 and cohort 2 patients entered into this study are listed in Table 1. There was no overlap between patients in cohort 1 and cohort 2. The study was conducted under a protocol approved by the Western University Health Sciences Research Ethics Board and the Clinical Research Impact Committee of Lawson Health Research Institute. Immunohistochemical staining was conducted using the following antibodies: TBX3 (Abcam, Cambridge, MA, USA; ab99302; 1/200), SLUG (Abcam; ab27568; 1/750), and TWIST1 (Abcam; ab50887; 1/750). Details relating to immunohistochemistry protocol and quantification methods are located in the supplementary material, Supplementary materials and methods.
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3

Twist1 Protein Expression Analysis

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Western blot was performed to explore the effects of transfections on the expression of Twist1 protein. At 24 h post-transfection, SHP-77 cells were harvested and total proteins were extracted from 105 cells using RIPA solution (GenePharma) and protein concentrations were measured using bicinchoninic acid assay (BCA) assay (GenePharma). All samples were incubated with boiling water for 12 min to denature proteins, following by electrophoresis (10% SDS-PAGE gel) to separate proteins. PVDF membranes were used to perform protein transfer and blocking was achieved by incubating the membranes with 5% non-fat milk for 2 h at room temperature. Following that, membranes were first incubated with anti-Twist1 (1: 2000, ab50887, Abcam) anti-GLUT1 (1: 2000, ab15309, Abcam) rabbit primary antibodies for 15 h at 4 °C, followed by incubation with goat HRP (IgG) (1:2000; ab6721; Abcam) secondary antibody for 2 h at 25 °C. ECL Western Blotting Substrate Kit (ab65623, Abcam) was used to develop signals and grey values were processed using Image J v1.46 software.
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4

Western Blot Analysis of Stem Cell Markers

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Western blot analysis was performed as in(4 (link)) using antibodies to Twist1/Twist2 (ab50887; Abcam, Cambridge, MA), c-Maf (sc7866; Santa Cruz Biotechnology, Santa Cruz, CA), Bmi1 (05-1322; EMD Millipore, Billerica, MA), or anti-GAPDH (EMD Millipore).
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5

Twist1 Protein Immunostaining and Cartilage/Bone Staining

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Staining for Twist1 protein was carried out on frozen sections of E11.5 forelimb buds using mouse monoclonal anti-Twist1 antibody 2C1A (Abcam ab50887, 1/50 dilution) and AlexaFluor 488 conjugated donkey anti-mouse secondary antibody (Life Technologies) as described [15] (link). Stained sections were imaged on a Zeiss Axio Imager M1. For bone and cartilage staining, embryos were collected in water at E17.5, skinned and stained as whole specimens as described previously [15] (link), [19] . Specimens were stored in 80% glycerol and limbs were photographed with a Leica microscope and SPOT digital camera.
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6

Immunohistochemical Analysis of SRC-1 and Twist1

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Tissue sections (5 μm thickness) were prepared, deparaffinized in xylene, and hydrated using an ethanol gradient. Antigen retrieval and IHC were performed as described previously 12 (link). For IHC, the sections were microwaved in 0.01 M sodium citrate for 15 minutes and immersed in 3% H2O2 for 10 minutes. After blocking in 10% goat serum for 1 hour and incubated with anti-SRC-1 (#2191 Cell Signaling, Danvers, MA) or anti- Twist1 (ab50887; Abcam, Cambridge, MA) antibody at 4℃ overnight, tissue sections were incubated with appropriate biotin-labeled secondary antibodies, followed by peroxidase-conjugated avidin (Vector Laboratories, Burlingame, CA USA) and positive signals were developed in the 3,3-diaminobenzidine tetrahydrochloride (DAB) solution. After counterstaining with hematoxylin, the slides were ready for microscopy examination.
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7

Western Blot Analysis of Cellular Proteins

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Cells were harvested with ice-cold PBS and then lysed in RIPA lysis buffer (Beyotime, China) for 40 min on ice. Nuclear extracts were extracted using the commercial kit (NE-PER, Thermo, USA) according to the manufacturer's instructions. The protein lysates were separated by SDS-PAGE and electroblotted onto PVDF membranes (Immobilon). After blocking with 10% fat-free milk at room temperature for 1 h, the membranes were incubated with primary antibodies mouse anti-Twist1 (1:50, ab50887, Abcam), rabbit anti-gamma H2AX (1:1000, ab 11174, Abcam), rabbit anti- H2AX (1:1000, ab 11175, Abcam), mouse anti-HIF-1α (1:250, 610959, BD), rabbit anti-EGFR (1:1000, #4267, Cell Signaling Technology), mouse anti-DNA-PKcs (1:1000, sc-390495, Santa Cruz), mouse anti-Lamin B1 (1:500, 66095-1, Proteintech), mouse anti-GAPDH (1:1000, KM9002, Tianjin Sungene Biotech) or mouse anti-β-actin (1:1000, KM9001, Tianjin Sungene Biotech), and corresponding secondary antibodies (Biosharp). Finally, the blots were detected by Super-Signal West Femto kit (34095, Thermo) and analyzed by Image Lab (Bio-Rad).
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8

Rapamycin and DHT Regulation of AR Signaling

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Rapamycin was purchased from Selleck Ltd., which was dissolved in dimethyl sulfoxide (DMSO) to form a 5 mM stock solution, and aliquots were stored at −20 °C. 4, 5 α-dihydrotestosterone (DHT) (Sigma-Aldrich) was dissolved in ethanol. Fetal bovine serum (FBS), antibiotics and RPMI 1640 medium were purchased from Gibco (Carlsbad, CA, United States). RIPA lysis buffer and antibodies of AR, FKBP51, PSA, and GAPDH were purchased from Sigma Chemical Co (St. Louis, MO, USA). Fluorescein-conjugated goat anti-rabbit secondary antibody was produced from Abcam (ab50887, Abcam, Cambridge, UK).
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9

Recombinant SLIT2 Protein Analysis

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Recombinant human SLIT2 (aa1122–1529) was purchased from R&D Systems (Minneapolis, MN, United States). Anti-β-actin (A5316) monoclonal antibody was from Sigma (St. Louis, MO, United States). Anti-VEGFR2 (2479) antibody was from Cell Signaling (Danvers, MA, United States). Anti-TWIST1 antibody was from Abcam (ab50887, Cambridge, MA, United States) and Santa Cruz Biotechnology (sc-15393, Dallas, TX, United States).
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10

Detailed Embryonic Histology Protocols

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All immunohistochemistry, and histological staining were performed according to standard protocols. Twist immunohistochemistry was performed using anti-Twist1a (ab50887, Abcam). 12μm cryosections were obtained from embryos fixed overnight in 4%PFA. Images of sections were tiled z-stacks obtained using the Zeiss 700 confocal microscope and Plan-Aprochromat 40x/1.0 objective. Images were presented as maximum projections from 10μm confocal z-stacks where the optical slice size was 1.2μm. Alizarin red staining was performed according to (Nagy, 2003 ). Wholemount images were obtained using the Zeiss AXIO zoom V16.
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