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23 protocols using transforming growth factor β1

1

Differentiation of Murine CD4+ T Cell Subsets

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Naive CD4+ T cells (CD62L+CD44lo) were prepared by fluorescence-activated cell sorting from spleens and lymph nodes of C57BL/6 mice. The sorted cells were primed for 96 hrs with anti-CD3 (1 μg/ml; 145-2C11; BD Biosciences) and soluble anti-CD28 (2 μg/ml; 37.51; BD Biosciences). Cells stimulated under neutral conditions were defined as TH0 cells. Cells were stimulated to differentiate into TH1 cells by supplementation with IL-12 plus anti-IL-4 or into TH2 cells by supplementation with IL-4 and anti-IFN-γ. For TH17 cell differentiation, cells were stimulated with transforming growth factor-β1 (5 ng/ml), IL-6 (20 ng/ml) and IL-23 (10 ng/ml; all from R&D Systems) and into Treg cells by supplementation with transforming growth factor-β1 (15 ng/ml).
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2

Antibody Characterization for Cell Signaling

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Anti-ALK, anti-phospho-Akt at serine (Ser) 473 (pAkt), anti-Akt, anti-Slug, anti-Snail, and anti-cleaved caspase 3 antibodies were purchased from Cell Signaling (Danvers, MA, USA). Anti-Sox11 and anti-β-actin antibodies and doxorubicin were obtained from Sigma-Aldrich Chemicals (St. Louis, MO, USA). Anti-N-myc, anti-Twist1, and anti-Histone H1 antibodies were from Abcam (Cambridge, MA, USA). Anti-NF-κB/p65, anti-p27kip1, and anti-bax antibodies were from BD Biosciences (San Jose, CA, USA). Anti-bcl-2 and anti-p21waf1 antibodies were from Dako (Glostrup, Denmark). Anti-cyclin A antibody was from Novocastra (Newcastle, UK). Recombinant human tumor necrosis factor (TNF)-α, transforming growth factor (TGF)-β1, and hepatocyte growth factor (HGF) were purchased from R&D Systems (Minneapolis, MN, USA).
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3

Antibody-based Analysis of Fibrosis Markers

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Antibodies used for Western blotting and immunofluorescence were as follows: anti-α-SMA (ab5694; Abcam, Cambridge, England), anti-collagen Type I (600-401-103-0.1; Rockland, Inc., PA, USA), anti-fibrinogen (ab23750, Abcam), anti-Periostin (ab14041, Abcam), anti-Smad2 (#3103S; Cell Signaling, Beverly, MA, USA), anti-phosphorylated Smad2 (#3101S; Cell Signaling), anti-Stat3 (#9139S; Cell Signaling), and anti-phosphorylated Stat3 (#9145S, Cell Signaling). Antibodies for the immunohistochemistry experiments were as follows: anti-E-cadherin mAb (M3612; Dako, Carpinteria, CA, USA), anti-α-SMA (ab5694; Abcam), and anti-Ki67 (M7240; Dako). Transforming growth factor (TGF)-β1 was purchased from R&D Systems (240-B; Minneapolis, MN, USA). For in vitro studies, PFD was provided by Shionogi & Co., Ltd. (Osaka, Japan) and dissolved in DMSO to a concentration of 50 μg/mL. For in vivo studies, Pirespa tablets were purchased from Shionogi & Co. and dissolved in DMSO, using one-fifth of the final volume of the total solvent, after crushing using a micro smash (TOMY SEIKO CO., LTD, Tokyo, Japan). Sterile normal saline at four-fifths of the final total volume was then added to bring PFD to a final concentration of 40 mg/mL.
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4

HUVEC Cell Culture and Protein Analysis

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Human umbilical vein endothelial cells (HUVECs) (BCRC H‐UV001) at passages 3–6 were cultured in M199 medium (Gibco) that contained 20% Fetal Bovine Serum (Hyclone), 1% ECGS (Millipore), 0.2% Heparin (China Chemical & Pharmaceutical Co., Ltd), 100 μg/ml streptomycin and 100 units/ml penicillin (Gibco). In detail, 1 × 106 HUVEC cells were seeded in a 10‐cm dish. After overnight incubation, cells were treated with 10 ng/ml of transforming growth factor (TGF)‐β1 (R&D), 2 μM of monocrotaline (MCT) (Sigma) or 20 ng/ml propylthiouracil (PTU) (Panbiotic Laboratories Co., Ltd.). After additional incubation for 48 h, the cells were collected, and protein extract was harvested with RIPA buffer for Western blot analysis.
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5

Differentiation of Macrophage Subtypes

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Recombinant granulocyte-macrophage colony stimulating factor (GM-CSF), macrophage (M)-CSF, interleukin (IL)-1β, IL-6, IL-4, IL-10, IL-13, interferon (IFN)-γ, lymphotoxin (LT)-α, tumor necrosis factor (TNF), M-CSF and GM-CSF were purchased from ProSpec-Tany Technogene (Rehovot, Israel), transforming growth factor (TGF)-β1 from R&D Systems (Minneapolis, MN), and dexamethasone was purchased from Sigma-Aldrich (St. Louis, MO). A mouse monoclonal antibody (clone 3C9) that recognizes the IgV domain of human CRIg was kindly provided by Dr. Menno van Lookeren Campagne (Genentech, San Francisco, CA). RPMI 1640 tissue culture medium, foetal calf serum (FCS) and L-glutamine were purchased from SAFC Biosciences (Lenexa, KS).
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6

Multilineage Differentiation of pMSCs and eMSCs

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pMSCs and eMSCs were induced to differentiate into osteogenic, chondrogenic, and adipogenic lineages. For osteogenic differentiation, both types of cells were cultured in osteogenic medium (DMEM [Dulbecco's modified Eagle's medium] supplemented with 10% fetal bovine serum (FBS), 50 μM ascorbic acid‐2‐phosphate, 10 mM β‐glycerophosphate, and 50 nM dexamethasone [all from Sigma‐Aldrich]). The medium was changed every 3 days. After 3 weeks, the cells were fixed in 4% paraformaldehyde and processed for Alizarin Red S and Von Kossa staining. For chondrogenic differentiation, cells were cultured in chondrogenic medium (DMEM supplemented with 10% FBS, 50 μM ascorbic acid‐2‐phosphate [Sigma‐Aldrich], and 10 ng/ml transforming growth factor [TGF]‐β1 [R&D Systems, Minneapolis, MN,
https://www.rndsystems.com]). Cells were processed for Safranin O and immunocytochemistry staining for COL2A1 and Aggrecan after 3 weeks. For adipogenic differentiation, cells were exposed to adipogenic medium (DMEM supplemented with 10% FBS, 1 μM dexamethasone, 200 μM indomethacin [Sigma‐Aldrich], 10 μg/ml insulin [Sigma‐Aldrich], and 0.5 mM methylisobutylxanthine [Sigma‐Aldrich]) for 4 weeks. The medium was changed every 3 days. After 4 weeks, the cells were processed for Oil Red O and immunocytochemistry staining of aP2 and C/EBP.
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7

Protein Expression Analysis in Kidney Tissues

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The protein concentrations of frozen kidney tissues were measured using a BCA protein assay (Pierce Biotechnology, Rockford, IL, USA). For immunodetection, the blot was incubated overnight with the primary antibodies against the following proteins: MnSOD (diluted 1:2,000, Abcam, Cambridge); catalase (1:2,000, Abcam); Bax (1:500, Santa Cruz Biotechnology, Santa Cruz, CA, USA); Bcl-2 (1:100, Santa Cruz Biotechnology); transforming growth factor (TGF)-β1 (1:4,000, R&D Systems, MN, USA); PI3K (1:1,000, Abcam); Akt (1:1,000, Cell Signaling Technology, Danvers, MA, USA), phospho-Ser473 Akt (1:1,000, Cell Signaling Technology); FoxO3a (1:1,000, Cell Signaling Technology); and phospho-Ser253 FoxO3a (1:1,000, Cell Signaling Technology). The protein bands were visualized using a chemiluminescence detection system (ImageQuant LAS 4000 mini, GE Healthcare, Piscataway, NJ, USA). Band intensities were determined with Image-Pro Plus software (Media Cybernetics Inc., Rockville, MD, USA).
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8

Comparative Analysis of Cell Lines

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The clear cell renal carcinoma (Caki-2) cell line derived from the epithelium of the proximal tubules, the in vitro spontaneously transformed aneuploidy immortal keratinocyte (HaCaT) cell line from adult human skin, the spontaneously arising retinal pigment epithelial (ARPE-19) cell line, the colon carcinoma (Caco-2) cell line and the normal human small intestinal epithelial cell-6 (HIEC-6) were obtained from the American Type Culture Collection (Manassas, VA, USA. RPMI 1640 medium was purchased from Sigma-Aldrich (St. Louis, MO, USA) and fetal bovine serum (FBS) from Bio Whittaker (Walkersville, MD, USA). L-glutamine, penicillin, and streptomycin were from Invitrogen (Carlsbad, CA, USA). The scrambled peptide (NRVYNGPAASPVSEQMPIN), the corisin (IVMPESSGNPNAVNPAGYR), and the corisin-like peptide (IVMPESGGNPNAVNPAGYR) were synthesized and provided by Peptide Institute Incorporation (Osaka, Japan). Transforming growth factor (TGF)β1 was purchased from the R&D System (Minneapolis, MN, USA).
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9

Podocyte response to diabetic milieu

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Immortalized mouse podocytes were cultured under permissive conditions as described previously.28 (link), 29 (link) Differentiated podocytes were exposed to either control medium that contained normal podocyte culture medium consisting of 5mM glucose and 20 mM mannitol as osmotic control or a diabetic milieu consisting of 25 mM D-glucose (Sigma-Aldrich, St. Loius, MO, USA) and 2 ng/ml transforming growth factor (TGF)β1 (R&D systems, Minneapolis, MN, USA) in the presence or absence of sodium D-β-hydroxybutyrate (β-HB, 4 mM, Sigma-Aldrich) or trigonelline (30 μM, Sigma-Aldrich) for 48 hours. The dose of β-HB was adopted according to previous studies14 (link),15 (link) after optimization by pilot experiments.
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10

Quantification of Secreted Proteins in CPs

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The quantities of the following secreted proteins were determined in CPs cultured when cells were exposed to normoxic conditions for 48 hours in serum-free medium: human VEGF, basic fibroblast growth factor, hepatocyte growth factor, angiopoietin-1, angiopoietin-2, and stromal cells–derived factor 1, transforming growth factor-β1, and procollagen type I (all from R&D Systems, UK). ELISAs were performed following manufacturer’s instructions. Cytokine concentrations were expressed normalizing the data for the number of the cells at the end of the collection time, and for the time of incubation. Four different CPs lines were assessed and experiments were performed in triplicate.
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