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29 protocols using alexa fluor 594 conjugated secondary antibody

1

Immunohistochemistry for Neuronal Markers

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Biotinylated WFA and Dylight 488-conjugated streptavidin were purchased from Vector Laboratories (Burlingame, CA, USA; catalog #WFAB-1355 and SA-5488). Mouse anti-calcium/calmodulin-dependent protein kinase II alpha (CaMKII-α) was purchased from Millipore Sigma (Burlington, MA, USA; catalog #05–532). Mouse anti-parvalbumin (PV) was purchased from Synaptic Systems (Goettingen, Germany; catalog #195011). Rabbit anti-c-Fos was purchased from Santa Cruz Biotechnology (Dallas, TX, USA; catalog #sc-52). Corresponding Alexa Flour 488- and Alexa Fluor 594-conjugated secondary antibodies were from Jackson ImmunoResearch (West Grove, PA, USA; catalog #715-545-151 and 711-585-152). ChABC (#C3667) and quinine hydrochloride dihydrate (#Q1125) were purchased from Millipore Sigma. Ethanol (95%) was purchased from Decon Labs (King of Prussia, PA, USA).
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2

Immunofluorescence Staining of MEFs

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MEFs were plated on 8-well Nunc Lab-Tek II chamber slides (Sigma-Aldrich) and fixed with 4% paraformaldehyde for 15 min at 4 °C. After several washes with PBS, samples were blocked with 5% goat (or donkey) serum in 0.5% PBST for 30 min at RT. Cells were incubated with the indicated primary antibodies at 4 °C overnight. Bound primary antibodies were detected by incubating with secondary antibodies for 90 min at RT. The following primary antibodies were used for the cell staining: anti-YAP (rabbit monoclonal, 14074, Cell signaling); anti-TAZ (rabbit polyclonal, HPA007415, Sigma-Aldrich); and Alexa Fluor 488-conjugated anti-phalloidin (A12379, Thermo Fisher) antibodies. Alexa Fluor 594-conjugated secondary antibodies were purchased from Jackson ImmunoResearch. Nuclei were stained with DAPI (Invitrogen) and slides were mounted and imaged as described above.
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3

Validating Exogenous Protein Expression

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To confirm exogenous protein expression, DSC neurons electroporated with Dcc or Robo3 cDNA and gfp were microdissected, dissociated (0.05% trypsin, 0.5 mM EDTA), and cultured for 24 hrs in PDL (poly-D-Lysine, 100 μg/ml) coated culture dish in the culture medium (Neurobasal, 1x B27, 50 U/ml Pen/Strep, and 250 ng/ml Netrin-1). Cells were then fixed with 4% paraformaldehyde, and stained with anti-HA (3F10, Roche) and Alexa Fluor 594-conjugated secondary antibodies (Jackson ImmunoResearch).
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4

Isolation and Characterization of Murine Islet Cells

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Culture media and supplements, collagenase type XI, histopaque-1077, DMSO, EDTA, IBMX, carbachol, clonidine, LiCl, exendin-4, forskolin, agarose, bionic buffer and BSA were obtained from Sigma-Aldrich (Dorset, UK). DNeasy Blood and Tissue, RNeasy Mini and QuantiTect SYBR Green PCR kits and qPCR primers for mouse and human CB1 (CNR1), GPR119, GPR18, GPR92 (LPAR5), delta-opioid receptor (OPRD1), transient receptor potential cation channel subfamily V member 1 (TRPV1), GPR3, GPR6, GPR12, and ACTB were from Qiagen (Manchester, UK). PCR primers for Gpr55 genotyping were from Eurofins Genomics (Wolverhampton, UK). SR141716A was from Tocris Bioscience (Abingdon, UK). AM251 and rabbit anti-Ki67 primary antibody were from Abcam (Cambridge, UK). cAMP HiRange and IP-one (IP1) assays were from Cisbio (Codolet, France). TaqMan RT-PCR kit, 100 base pairs (bp) DNA ladder, SYBR® DNA gel stain, HEPES, HBSS and DAPI were from Thermo Fisher Scientific (Paisley, UK). Caspase-Glo 3/7 and GoTaq® G2 Green Master Mix were from Promega (Southampton, UK). Recombinant TNFα, IFNγ and IL-1β were from PeproTech EC (London, UK). Guinea pig anti-insulin was obtained from Dako (Cambridge, UK). AlexaFluor 488- and AlexaFluor 594-conjugated secondary antibodies were from Jackson ImmunoResearch Laboratories (Newmarket, UK).
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5

Immunofluorescence Staining Protocol

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Cells cultured on Lab-Tek chamber slides were fixed in 4% paraformaldehyde and rinsed in PBS. Cells were incubated with diluted primary antibodies overnight and then with Alexa Fluor 594-conjugated secondary antibodies (Jackson ImmunoResearch Laboratories, West Grove, PA, USA) at room temperature for 2 h, and counter stained with DAPI for 15 min. Stained cells were photographed using a confocal microscope.
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6

Immunohistochemical Staining of Axon Guidance Receptors

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IHC was carried out as previously described (Xu et al., 2014 (link)) using the following antibodies: anti-L1 (MAB5272, MilliporeSigma), anti-ROBO1 (NBP2-20195, Novus Biologicals), anti-ROBO2 (NBP1-81399, Novus Biologicals), anti-ROBO3 (Sabatier et al., 2004 (link)), anti-TAG1 (4D7, Developmental Studies Hybridoma Bank), and Alexa Fluor 594-conjugated secondary antibodies (Jackson ImmunoResearch). The antibodies were used at a final concentration of 0.5–1 μg/ml.
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7

Immunofluorescence Imaging of Tissue Sections

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Sixteen-micrometer frozen sections were collected, air-dried briefly, rehydrated in PBS, blocked with protein block (5% donkey serum in PBS containing 0.1% Triton X-100), and incubated over night at 4 °C with primary antibodies including: chicken anti-GFP 1:400 (A10262, Life Technologies, Carlsbad, CA, USA) and anti-CD11c. After PBS washes for three times, the slides were incubated with corresponding Alexa Fluor 488 and Alexa Fluor 594 conjugated secondary antibodies, 1:400, (Jackson ImmunoResearch Laboratories, West Grove, PA) and counterstained for nuclei with SlowFade Gold Antifade mounting reagent with 49,6-diamidino-2-phenylindole (DAPI) (Life Technologies). Immunofluorescence microscope images were collected using an FVII digital camera with Extended Focal Imaging (EFI) function (Olympus America, Center Valley, PA). The camera acquisition time for EGFP fluorescence was optimized and set a priori for each tissue.
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8

Immunofluorescence Assay for LC3B

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NP cells were plated in a six-well plate. After treatment, NP cells were washed three times with PBS, fixed with 4% paraformaldehyde, and then infiltrated with 0.1% Triton X-100 in PBS. After blocking the cells with 5% bovine serum albumin, they were incubated with mouse monoclonal anti-LC3B (1:1000 dilution, #83506, CST). Finally, the cells were incubated with Alexa Fluor 594-conjugated secondary antibodies (715–585–150; Jackson ImmunoResearch) and stained with the nuclear staining dye DAPI. A Zeiss LSM800 confocal microscope was used to observe the stained cells in five random different fields for each slide.
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9

Protein Expression Analysis Protocol

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See the Supplementary Material for the primary antibodies information. Alexa Fluor 488- and Alexa Fluor 594-conjugated secondary antibodies were purchased from Jackson Immuno Research Laboratories Inc., West Grove, PA, USA. HRP-labeled secondary antibodies were obtained from GE Healthcare Life Science, Beijing, China. All reagents for the quantitative RT-PCR were purchased from Promega.
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10

Astrocyte TREK-1 and TWIK-1 Immunofluorescence

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Primary astrocytes were seeded onto Poly-D-Lysine (PDL)-coated coverslips and maintained in a humidified incubator for 2 days. Thereafter, astrocytes were transfected with the indicated CRISPR/Cas9 plasmids by electroporation and incubated for 48 h. Cells were fixed with 4% paraformaldehyde (PFA) and permeabilized with 0.3% Triton X-100. After blocking for 1 h in 0.1% Triton X-100 and 3% BSA, the cells were incubated with mouse anti-TREK-1 (Santa Cruz Biotechnology, Dallas, TX, USA; RRID: sc-398449, 1:100) or mouse anti-TWIK-1 (Santa Cruz Biotechnology, Dallas, TX, USA; RRID: sc-517040, 1:100) antibodies at 4 °C overnight. After washing with PBS, cells were incubated with Alexa Fluor 594-conjugated secondary antibodies (Jackson Immunoresearch, West Grove, PA, USA, 1:400) for 1 h at room temperature. After three rinses with PBS and staining with 4′,6-diamidino-2-phenylindole (DAPI) to visualize nuclei, images were acquired by confocal microscopy using a Nikon A1 confocal microscope (Nikon Instruments Inc., Melville, NY, USA).
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