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2 protocols using αcd14 apch7

1

Single-Cell TCR Sequencing of Tetramer-Positive CD8+ T Cells

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Tetramer magnetic enrichment and single‐cell PCR were undertaken as previously described.37, 47 Briefly, PBMCs from HLA‐A*03:01+ individuals were FcR blocked (Miltenyi Biotech) in MACS buffer (phosphate‐buffered saline (PBS)), 0.5% bovine serum albumin (BSA; Sigma‐Aldrich); and 0.2 mm EDTA (Sigma‐Aldrich) for 15 min at 4°C. PBMCs were then stained with PE‐conjugated tetramer in MACS buffer for 1 h at room temperature, washed and labelled with anti‐PE microbeads (Miltenyi Biotech) at 4°C for 30 min. Epitope‐specific cells were enriched by passing twice over a LS magnetic column (Miltenyi Biotech) and surface stained with αCD3‐BV480 (BD Biosciences), αCD8‐PerCPCy5.5 (BD Biosciences), Live/Dead‐NIR (Life Technologies), αCD14‐APCH7 (BD Biosciences), αCD4‐APCH7 (BD Biosciences), αCD19‐APCH7 (BD Biosciences), αCD27‐BV711 (BD Biosciences), αCD45RA‐FITC (BD Biosciences), αCCR7‐PECy7 (BD Biosciences) and αCD95‐BV421 (BD Biosciences) at 4°C in the dark. Cells were resuspended in sort buffer (PBS, 0.1% BSA; Gibco, CA, USA), and tetramerhigh/CD8+ T cells were single‐cell sorted directly into Twin‐Tech PCR plates (Eppendorf, Hamburg, Germany) on an Aria Fusion (BD Biosciences) and were stored at −80°C until used. The gating strategy is shown in Supplementary figure 1c.
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2

PBMC Enrichment for Tetramer Analysis

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In all, 1–2 × 107 PBMCs from HLA-B*37:01+ donors were FcR blocked in MACS buffer (phosphate-buffered saline (PBS), 0.5% bovine serum albumin (BSA); Gibco, CA, USA, 0.2 nM EDTA; Ajax Finechem, NSW, Australia) for 15 min at 4 °C (Miltenyi Biotech, Bergisch Gladbach, Germany) and tetramer stained with variant-specific tetramers conjugated to PE in MACS buffer for 1 h at room temperature. Cells were washed, a small amount was removed for unenriched control, and labeled with anti-PE microbeads (Miltenyi Biotech, Bergisch Gladbach, Germany) for 30 min at 4 °C. Following washing, cells were enriched by passing twice over LS magnetic columns (Miltenyi Biotech, Bergisch Gladbach, Germany)30 (link),55 (link). Bound cells were eluted in MACS buffer. All samples (unenriched, enriched, and flow-through) were surface stained for 30 min with αCD3-PeCy7 (eBiosciences), αCD8-PerCPCy5.5 (BD Biosciences), Live/Dead-NIR (Molecular Probes), αCD14-APCH7 (BD Pharmingen), αCD4-APCH7 (BD Biosciences), αCD19-APCH7 (Biolegend), αCD27-APC (BD Biosciences) and αCD45RA-FITC (BD Pharmingen) at 4 °C in the dark. Lymphocytes were washed, re-suspended in sort buffer (PBS, 0.1% BSA; Gibco, CA, USA), and were acquired on the BD Aria III.
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