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3 protocols using phospho kap1

1

Western Blot Analysis of Cellular Proteins

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Cells were lysed in RIPA lysis buffer (Beyotime Biotechnology, Shanghai, China) containing 1% protease inhibitor cocktail (VICMED, VPI012), and the cell lysates were then centrifuged at 14,000 × g at 4 °C for 15 min. Protein concentrations were quantified using the Bicinchoninic Acid protein assay kit (BCA; Beyotime, P0010). Total proteins (50 μg) were separated by SDS-PAGE and electro-transferred to polyvinylidene difluoride membranes (PVDF; Millipore, Billerica, MA, USA). Then the membranes were blocked with TBST buffer (NaCl 150 mmol/L, Tris 10 mmol/L, Tween-20 0.05% (v/v) pH = 7.6) containing 5% nonfat milk powder at room temperature for 2 h. The membranes were then probed overnight at 4 °C with primary antibodies, including phospho-KAP1(1:1000, Abcam, ab70369), KAP1(1:1000, Cell Signaling Technology, #4123), PCNA (1:2000, Servicebio, GB11010), Bcl-2 (1:1000, ABclonal, A0208), Bax(1:1000, ABclonal, A0207) followed by incubation with corresponding HRP-conjugated secondary antibodies (1:5000, Proteintech, SA00001-2) at room temperature for 2 h. Proteins on the membranes were visualized by adding the enhanced chemiluminescence reagent (Millipore, USA). Band intensities were analyzed using Image J 1.25 software (National Institutes of Health, Bethesda, USA) and normalized to loading controls.
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2

Western Blot Analysis of DNA Damage Proteins

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Protein lysates were prepared in RIPA buffer (Pierce), supplemented with Halt protease and phosphatase inhibitor cocktail (Thermo Fisher Scientific). Samples were run on 4%–12% gradient Bis-Tris SDS-PAGE gels (Invitrogen), transferred onto polyvinylidene difluoride membranes (Bio-Rad), and probed with antibodies against NBN (1:5,000), MRE11 (1:5,000), KAP1, phospho-KAP1 (1:2,500; Abcam), and GAPDH (1:1,000; Santa Cruz Biotechnology, catalog no. sc-20357, RRID: AB_641107). Horseradish peroxidase–conjugated or fluorophore-conjugated secondary antibodies were detected using ECL Prime Western Blotting Detection Reagent (GE Healthcare). Antibodies raised against human NBN and MRE11 proteins were custom made and kindly provided by the Petrini lab at MSKCC (42 ).
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3

Western Blot Analysis of DNA Damage Proteins

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Protein lysates were prepared in RIPA buffer (Pierce), supplemented with Halt protease and phosphatase inhibitor cocktail (Thermo Scientific). Samples were run on 4–12% gradient Bis-Tris SDS-PAGE gels (Invitrogen), transferred onto PVDF membranes (Bio-Rad) and probed with antibodies against NBN (1:5,000), MRE11 (1:5,000), KAP1, phospho-KAP1 (1:2500; Abcam) and GAPDH (1:1,000; Santa Cruz Biotechnology Cat# sc-20357, RRID: AB_641107). HRP- or Fluorophore-conjugated secondary antibodies were detected using ECL Prime Western Blotting Detection Reagent (GE Healthcare). Antibodies raised against human NBN and MRE11 proteins were custom made and kindly provided by the Petrini lab at MSKCC (42 (link)).
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