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5 protocols using igg2aκ

1

Nanobody Binding Profiling to IgG

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To profile the binding of anti-IgG nanobodies to different IgG subclasses and analyze their cross reaction to IgG from other species, a dot blot assay was performed. Nitrocellulose membrane was cut in strips, and different IgGs (500 ng for polyclonal total IgG, Fab, and Fc fragments; ∼250 ng for monoclonal IgG in 1 µl) were spotted. Strips were blocked with 4% milk (wt/vol) in 1× PBS for 30 min at room temperature. Nanobodies were added at ∼300 nM in 1 ml milk for 30 min. After washing two times with 1× PBS for 10 min each, bound nanobodies were detected at 488 nm in a fluorescence scanner (Starion FLA-9000; Fujifilm). The following IgGs were used: IgG1 κ mAb A225 (Cordes et al., 1995 (link)); IgG1 λ (#010-001-331; Rockland); IgG2a κ (02-6200; Thermo Fisher Scientific); IgG2b κ (02-6300; Thermo Fisher Scientific); IgG3 κ (401302; BioLegend); polyclonal IgG Fab fragments (010-0105; Rockland); and polyclonal IgG Fc fragments (31205; Thermo Fisher Scientific). Polyclonal IgG of the following species were used: rabbit (made in-house, affinity-purified from serum); mouse (I8765); rat (I4131); goat (I5256); sheep (I5131); human (I4506; all Sigma-Aldrich); and guinea pig (CR4-10; Sino Biological).
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2

Blocking TIL-Melanoma Interactions

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To block the interaction between TILs and melanoma cells two antibodies were used: α-HLA-ABC (Cat.#16-9983-85) from Thermofisher, and α-CD3 (OKT3) (Cat.# 317326) from Biolegend. An isotype control, IgG2a, κ (Cat.#16-4724-82) from Thermofisher was also used. To measure CD33 expression two antibodies were used: α-human CD33 (Cat.#303407) and an isotype control, IgG1, κ (Cat.#400119) from Biolegend. All antibodies were used in accordance with the manufacture's recommendation.
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3

Quantification of Foxp3+ iNKT Cells

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To quantify Foxp3+ iNKT cells, PBMCs were permeabilized using a Foxp3 staining buffer kit (eBioscience) and stained with FITC-TCRvα24 (Beckman Coulter), APC-TCRvβ11 (BD Biosciences), and PE-Foxp3 (eBioscience) mAbs. IgG2aκ (eBioscience) was used as an isotype control for Foxp3 mAb. After gating on lymphocytes and Vα24+Vβ11+ iNKT cells, Foxp3+ cells were expressed as a percentage of Vα24+Vβ11+ iNKT cells.
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4

Foxp3, IL-6, and IL-17 Staining of T Cells and BMSCs

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For Foxp3 staining, whole blood samples were co-stained with anti-CD4-FITC and anti-CD25-PE (PC61.5). After fixation and permealization, cells were stained with APC-labeled anti-Foxp3 mAb (FJK-16s) (all mAbs were from e-Bioscience) as described (Chen et al., 2007 (link)). For IL-6, and IL-17 staining, 2 x 106 spleen cells were stimulated with 10 ng/ml phorbol myristate acetate (PMA) (Sigma) and 10 ng/ml ionomycin (Sigma) in the presence of the Golgi inhibitor Brefeldin (Sigma) (10 μg/ml) for 4 hr. The cells were then stained with FITC-labeled anti-CD4 (GK 1.5, e-Bioscience) and PE-labeled anti-IL-6 (MP5-20F3, BD Pharmingen) or APC-labeled anti-IL-17 (eBio17B7, e-Bioscience) as described (Kappel et al., 2009 (link)). FITC-labeled anti-CD8 (53-6.7) and MHC class II (M5/114.15.2, e-Bioscience) were used for FACS analysis on T cells and BMSCs. PE-labeled IgG2a, FITC-labeled IgG1, APC-labeled IgG2a and IgG2a, κ were used as isotype controls (all from e-Bioscience). Cells were analyzed on a FACScan with Cellquest software (Beckton Dickinson). For the co-cultures with T cells and BMSCs, T cells were stimulated with Brefeldin (10 μg/ml) alone for 4 hr.
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5

PBMC Isolation and Fungal Stimulation Assay

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Human PBMCs were isolated by density centrifugation using Histopaque-1077 (Sigma) as described (Endres et al., 1988 (link)). For stimulation experiments, the interactions were performed in round-bottom 96-well microplates with 100 μL of cells adjusted to 5 × 105 PBMCs in RPMI 1640 Dutch modification (added with 2 mM glutamine, 0.1 mM pyruvate and 0.05 mg/mL gentamycin; all reagents from Sigma) and 100 μL with 1 × 105 fungal cells freshly harvested or treated. The interactions were incubated for 24 h at 37°C with 5% (v/v) CO2. In some experiments, PBMCs were preincubated for 1 h at 37°C with either laminarin (200 μg/mL), anti-TLR2 (10 μg/mL, eBioscience, Cat. No. 16-9922) or antibodies to TLR4 (10 μg/mL, Santa Cruz Biotechnology, Cat. No. sc-293072) prior to stimulation with Candida cells. Isotype matched, irrelevant antibodies, IgG2aκ (10 μg/mL, eBioscience, Cat. No. 14-4724-85) and IgG1(10 μg/mL, Santa Cruz Biotechnology, Cat. No. sc-52003) were used as controls for experiments assessing TLR2 and TLR4, respectively. All reagents used for the pre-incubation experiments were negative to contamination with LPS (tested with the Limulus amebocyte lysate from Sigma), and all reactions were performed in presence of 5 μ g/mL polymyxin B (Sigma) (Schwartz et al., 1972 (link)). Plates were centrifuged for 10 min at 3000 × g at 4°C, the supernatant saved and kept at −20°C until used.
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