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11 protocols using zm447439

1

Preparation of Small Molecule Inhibitors

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Chelerythrine chloride (C2932), PMA (P8139), KT 5720 (PKA inhibitor; K3761), and olomoucine (O0886) were purchased from Sigma-Aldrich and reconstituted in water, DMSO, methanol, or DMSO, respectively. ZM 447439 (Aurora Kinase Inhibitor VI; 189410) was purchased from EMD Millipore and reconstituted in DMSO. Working concentrations were selected based on the literature (Collas et al., 1997 (link); Gadea and Ruderman, 2005 (link); Lane et al., 2010 (link)). Concentrations used in vitro were olomoucine (2 mM), chelerythrine (390 µM), KT 5720 (56 nM), and ZM 447439 (20 µM). Note that the chelerythrine concentration used in vitro in extract was much higher than the concentrations used for in vivo treatment of embryos. It is common that higher concentrations of small molecule inhibitors are required in Xenopus extract, compared with in vivo, to have a maximal effect.
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2

Kinase Assay for Aurora B Activity

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Recombinant kinase-active Aurora B (Sigma, A2108) was incubated with 1 μg protein substrate in 25 μl kinase buffer (50 mM Tris-HCl pH 7.5, 10 mM MgCl2, 10 mM MnCl2, 1 mM DTT and 10 μM ATP) in the presence or absence of ZM-447439 (Merck) for 30 min at 30 °C. Substrate phosphorylation was analysed by SDS–PAGE and was monitored using H2AX-pS121 antibodies.
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3

Conditional Expression of YFP-Astrin in HeLa Cells

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HeLa cells (ATCC) cultured in Dulbecco’s Modified Eagle’s Media was supplemented with 10% FCS and antibiotics (Penicillin and Streptomycin). For live-cell imaging studies, cells were seeded onto 4-well cover glass chambered dishes (Lab-tek; 1064716). The HeLa FRT/TO YFP-Astrin WT, 4A or ∆70 cell lines were conditionally expressing siRNA-resistant YFP-Astrin (WT, 4A or ∆70) was created by transfection of HeLa Flp-In cells with pCDNA5-FRT/TO-YFP-Astrin WT, 4A or ∆70 expression plasmids followed by a brief Hygromycin selection and sorting for YFP positive using FACS. Both HeLa and Hela Flp-In cell lines were tested and confirmed free of Mycoplasma. Induction of exogenous YFP-Astrin was performed by exposing the cells to DMEM medium supplemented with Teracycline for 48 hr. For inhibition studies, cells were treated with 10 µM Monastrol (1305, TOCRIS), 20 µM STLC (83265,TOCRIS), 10 µM ZM447439 (2458, TOCRIS), 100 nM Taxol (T7191, SIGMA-ALDRICH) or 10 µM MG132 (1748, TOCRIS). For monopolar spindle studies, STLC or Monastrol treatment was for 2 hr and then supplemented with MG132 and ZM447439 for 15’ prior to fixation. For bipolar spindle studies, MG132 treatment was for 1 hr (Hart et al., 2019 (link)).
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4

Investigating Spindle Assembly in Oocytes

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The function of the two kinases Mps1 and AurkC was investigated using two inhibitory drugs, namely Mps1i or compound 5 (kindly supplied by Prof. Geert Kops Hubrecht Institute, Utrecht, the Netherlands) (Kwiatkowski et al., 2010 (link), p. 359–368) and AURKi or ZM447439 (CAS 331771, Sigma-Aldrich Chemical Co., St. Louis, Missouri, United States). In order to evaluate the function of Mps1 and AurkC on spindle assembly, mature oocytes displaying a polar body were first incubated for 10 min at 38°C with 5% CO2 in IVM medium containing 20 μM Nocodazole (M1404, Sigma-Aldrich Chemical Co., St. Louis, Missouri, United States) to depolymerize the MII-spindle. Following Nocodazole washout, the oocytes were left to re-form their spindle for 120 min in IVM medium with different concentrations of either MPS1i (0, 200, or 500 nM) or AURKi (0, 5, or 10 μM). The oocytes in the control group were not treated with Nocodazole or inhibitors.
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5

In vitro Phosphorylation of Cdt1 and Vimentin

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In vitro kinase assay was performed on 1 µg each of hekCdt1 and human vimentin (ab73843, Abcam) at 30°C for 1 h in assay buffer containing 25 mM Hepes, 50 mM NaCl, 1 mM DTT, 2 mM EGTA, 5 mM MgSO4, 10 µM ATP, and 5 µCi γ-[32P]ATP (Perkin Elmer) in the presence of 0.5 µg Aurora B kinase (AURKB-231H; Creative BioMart) alone or with its inhibitor ZM447439 (Sigma; 5 or 10 µM as indicated). Samples (30 µl) were then electrophoresed on SDS-PAGE gel and visualized by autoradiography. The same gel was stained with Coomassie to ascertain migration of the proteins.
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6

High-Throughput Screening of Mitotic Regulators

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The drugs used for screening in this study are listed in Supplementary Table 1.
Reversine, SP600125, ZM 447439, BI 2536, STLC, Dimethylenastron, SB203508, RO 3306, Cdk1 Inhibitor III, Roscovitine, NSC 95397, IPA3, Y-27632, ITX-3, Nocodazole, Paclitaxel, Blebbistatin, Cytochalasin B, MG 132 and Velcade were purchased from Sigma–Aldrich (St. Louis, MO, USA). AZ 3146 and Mps-BAY2a were obtained from Tocris (Bristol, United Kingdom). MLN8237 (Alisertib), AZD1152-HQPA (Baraserib) and SB743921 were purchased from Selleckchem. GSK923295 is from MedChem express.
Monoclonal antibodies against α-tubulin, CDK1, AURKA, PLK1, KIF11 (Sigma-Aldrich); CCNB1, CCNE1, TP53, CDKN1A, JNK1, JNK2 (Cell signaling); EB1, COFILIN (Santa Cruz), TTK, BUBR1 (Abcam). Polyclonal antibodies against PRC1 (Santa Cruz), Tpx2 [69 (link)]; Kif23 [70 (link)] were used.
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7

Inhibiting Kinases in Mouse Oocyte Meiosis

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All inhibitors used for the mouse oocytes are listed in Supplemental Table S3. 5-Itu (Cayman Chemicals; 0.5 μM) was used to inhibit haspin kinase with ethanol (Fisher) as the control (solvent for 5-Itu). To disrupt Bub1 H2A phosphorylation, we added BAY-1816032 (8 μM; MedChem Express); we used DMSO (Sigma) as control (solvent for BAY-1816032). We used ZM447439 (Tocris Bioscience; 5 μM) as an Aurora B/C inhibitor and DMSO (Sigma) as a control (solvent for ZM447439). For all mouse meiosis I experiments, BAY-1816032 and ZM447439 were added at 0 h when transferring oocytes to CZB, while 5-Itu was added after 5 h from CZB oocyte transfer. For all mouse meiosis II experiments, all drugs were added at 11 h. Oocytes were fixed 8 h after CZB oocyte transfer for meiosis I experiments and after 15 h for meiosis II experiments. We treated all meiosis I mouse oocytes with acidic Tyrode’s solution (Millipore Sigma) to remove the zone pellucida when imaging for Aurora kinase C, kinetochores, and DNA.
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8

Ku70 Knockout MEF Proliferation Assay

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Immortalized Ku70−/− MEFs were obtained from S. Matsuyama (Case Western, Cleveland). Hela and IMR-90 cells were obtained from ATCC. All cells were cultured in high glucose Dulbecco’s modified Eagle’s medium (DMEM) supplemented with 10% fetal bovine serum (FBS) at 37 °C in 5% CO2. Ku70−/− MEFs stably re-expressing Ku70 WT and mutants were generated by infecting Ku70−/− MEFs with recombinant MSCV retrovirus followed by puromycin selection as previously described26 (link). To assess proliferation rates, the Ku expressing MEFs were seeded in triplicate in 6-well dishes. At each time point cells were trypsinized, counted using a hemocytometer, and the mean number of cells was determined. Percent growth was obtained by dividing the number of cells at each time point by the number of cells at day 1. For irradiation experiments, cells were plated the night before at 50–70% confluency. Irradiations were performed with a Faxitron RX-650 at a dose rate of 1.42 Gy/min (10 Gy treatment) or 3.8 Gy/min (40 Gy treatment). For ATM inhibitor treatments, MEFs were incubated with 10 μM of KU-55933 (Selleck Chemicals, Houston, TX) for 1 hour prior to 4 Gy of irradiation. For Aurora B inhibitor treatments, MEFs were incubated with 20 nM of AZD-1152 and 50 nM ZM447439 (Sigma-Aldrich) for 48 hours.
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9

Cell culture of CASP-deficient cell lines

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U2OS (ATCC, Manassas, VA, USA), U2OS-CASP2−/−, U2OS-CASP2−/−/CASP3−/−, A549, A549-CASP2−/− and stable cell lines were maintained in Dulbecco’s Modified Eagles Medium (DMEM, Sigma-Aldrich) supplemented with 10% foetal bovine serum (JRH Biosciences, Lenexa, KS, USA), 0.2 mM l-glutamine (Sigma-Aldrich), 15 mM HEPES (Sigma-Aldrich) and 100 µM penicillin/streptomycin (Sigma-Aldrich) in a humidified incubator at 37 °C with 10% CO2. A549 and A549-CASP2−/− cell lines were provided by Prof. Villunger (Medical University of Innsbruck, Austria). Where indicated, cells were treated with 100 nM BI2536 (Axon Medchem, Netherlands), 2 µM ZM447439 (Sigma-Aldrich), 400 nM AZD1152-HQPA (Sigma-Aldrich), or 50 µM blebbistatin (Selleck Chemicals, Houston, TX, USA) for 24 or 48 h. MEFs were maintained in DMEM (Sigma-Aldrich) supplemented with 0.2 mM l-glutamine (Sigma-Aldrich), 15 mM HEPES (Sigma-Aldrich), 10% foetal bovine serum (JRH Biosciences) and 50 µM β-mercaptoethanol (Sigma-Aldrich), non-essential amino acid mix (Sigma-Aldrich), 100 µM penicillin/ streptomycin (Sigma-Aldrich). Cells were cultured in a humidified incubator at 37 °C with 10% CO2. Transfection of plasmid DNA was performed using Lipofectamine 3000 (Life Technologies, Carlsbad, CA, USA) according to the manufacturer’s instructions. All cell lines were tested for mycoplasma contamination.
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10

Inhibitors for Mouse Oocyte Meiosis

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All inhibitors used for the mouse oocytes are listed in Table S3. 5-Iodotubercidin (5-Itu; Cayman Chemicals; 0.5μM) was used to inhibit haspin kinase with ethanol (Fisher) as the control (solvent for 5-Itu). To disrupt Bub1 H2A phosphorylation, we added BAY-1816032 (8μM, MedChem Express); we used DMSO (Sigma) as control (solvent for BAY-1816032). We used ZM447439 (Tocris Bioscience, 5μM) as an Aurora B/C inhibitor and DMSO (Sigma) as a control (solvent for ZM447439). For all mouse meiosis I experiments, BAY-1816032 and ZM447439 were added at 0h when transferring oocytes to CZB, while 5-Itu was added after 5hrs from CZB oocyte transfer. For all mouse meiosis II experiments, all drugs were added at 11hrs. Oocytes were fixed 8hrs after CZB oocyte transfer for meiosis I experiments and after 15hrs for meiosis II experiments. We treated all meiosis I mouse oocytes with acidic Tyrode’s solution (Millipore Sigma) to remove the zone pellucida when imaging for Aurora kinase C, kinetochores, and DNA.
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