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Nanoscope analysis v120r1sr3

Manufactured by Bruker
Sourced in United States

Nanoscope Analysis v120R1sr3 is a software package developed by Bruker for the analysis and processing of data from Atomic Force Microscopy (AFM) systems. The core function of this software is to provide users with tools for visualizing, analyzing, and managing AFM data.

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5 protocols using nanoscope analysis v120r1sr3

1

Atomic Force Microscopy of Human Skin

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Human skin biopsies were embedded in OCT, and cryo-sections (10 μm) were attached onto the microscope cover glass (1.2 mm diameter, Fisher Scientific Co., Pittsburgh, PA). These AFM samples were allowed to air dry for at least 24 hours before imaging them to AFM analysis. Images were taken by Dimension Icon AFM system (Bruker-AXS, Santa Barbara, CA, USA) using a silicon AFM probe (PPP-BSI, force constant 0.01–0.5N/m, resonant frequency 12–45kHz, NANOSENSORS, Switzerland). AFM was conducted at the Electron Microbeam Analysis Laboratory (EMAL), University of Michigan College of Engineering, and analyzed using Nanoscope Analysis software (Nanoscope Analysis v120R1sr3, Bruker-AXS, Santa Barbara, CA, USA).
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2

Nanomechanical Mapping of Skin Dermis

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Nanoscale morphology and mechanical properties of the skin dermis were measured by AFM using previously established techniques in our laboratory with minor modifications [15 (link)]. Briefly, OCT embedded human skin samples were sectioned (50 μm) and mounted on glass coverslips (1.2 mm diameter, Fisher Scientific Co., Pittsburgh, PA). These AFM samples were allowed to air dry for at least 24 hours before AFM analysis. Mechanical properties; traction forces, tensile strength, and deformation were determined by Dimension Icon AFM system (Bruker-AXS, Santa Barbara, CA, USA) using PeakForceTM Quantitative NanoMechanics mode using a silicon AFM probe (PPP-BSI, force constant 0.01–0.5N/m, resonant frequency 12-45kHz, NANOSENSORS™, Switzerland). PeakForceTM Quantitative Nanomechanical Mapping (QNMTM) is a new AFM Nano-mechanical and Nano-imaging mode for measuring the Young's modulus of materials with high spatial resolution and surface sensitivity, by probing at the nanoscale. It maps and distinguishes between nanomechanical properties, including modulus and adhesion, while simultaneously imaging sample topography at high resolution. AFM was conducted at the Electron Microbeam Analysis Laboratory (EMAL), University of Michigan College of Engineering, and analyzed using Nanoscope Analysis software (Nanoscope Analysis v120R1sr3, Bruker-AXS, Santa Barbara, CA, USA).
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3

Atomic Force Microscopy of Collagen Lattices in Embedded Human Skin

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OCT embedded human skin samples were sectioned (50 μm) and mounted on glass coverslips (1.2 mm diameter, Fisher Scientific Co., Pittsburgh, PA). These AFM samples were allowed to air dry for at least 24 hours before AFM analysis25 . The scan positions of the collagen lattices were determined by light optical image. Images were obtained by AFM with ScanAsyst mode (Dimension Icon, Bruker-AXS, Santa Barbara, CA) in air using a silicon etched cantilever (NSC15/AIBS, MikroMasch, San Jose, CA) with a full tip cone angle ∼40° and the tip radius of curvature ∼10nm. AFM images were acquired at a scan rate of 0.977 Hz, 512×512 pixel resolutions. AFM imaging was conducted at the Electron Microbeam Analysis Laboratory (EMAL), University of Michigan College of Engineering, and analyzed using Nanoscope Analysis software (Nanoscope Analysis v120R1sr3, Bruker-AXS, Santa Barbara, CA).
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4

Atomic Force Microscopy Analysis of Mouse Skin Collagen

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Mouse skin biopsies and 3D collagen lattices were embedded in optimal cutting temperature, and cryosections (15 μm) were mounted on microscope cover glass (1.2 mm diameter, Fisher Scientific, Pittsburgh, PA) for AFM image analysis. AFM images were acquired using a Dimension Icon AFM system (Bruker-AXS, Madison, WI) in the air using a silicon-etched cantilever (NSC15/AIBS, MikroMasch, San Jose, CA) with a full tip cone angle of ~40 ° and the tip radius of curvature of ~10 nm. AFM images were acquired at a scan rate of 0.977 Hz, 512 × 512 pixel resolutions, as previously described (Qin et al., 2014 (link)). Collagen fibril’s average roughness was analyzed using Nanoscope Analysis software (Nanoscope Analysis v120R1sr3 Bruker-AXS, Santa Barbara, CA). AFM images were obtained from the Electron Microbeam Analysis Laboratory, University of Michigan College of Engineering, and analyzed using Nanoscope Analysis software (Bruker-AXS).
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5

Measuring Cellular Mechanics by AFM

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The mechanical properties of cells were measured by AFM using previously established techniques in our laboratory with minor modifications (Qin et al., 2014). Briefly, 3D collagen lattices were washed with PBS, and fibroblast morphology was confirmed visually prior to AFM (Fig. 1E). Cell mechanical properties, traction forces and elastic modules/tensile strength, were measured by Dimension Icon AFM system (Bruker‐AXS, Santa Barbara, CA, USA) using PeakForce Quantitative NanoMechanics mode in fluid wet condition using a silicon AFM probe (PPP‐BSI, force constant 0.01–0.5 N m−1, resonant frequency 12–45 kHz, NANOSENSORS, Switzerland). PeakForce Quantitative Nanomechanical Mapping (QNM) is an AFM technique for measuring nanoscale mechanical properties by calculation of Young's modulus of materials with high spatial resolution and surface sensitivity. AFM was conducted at the Electron Microbeam Analysis Laboratory (EMAL), University of Michigan College of Engineering, and analyzed using nanoscope analysis software (nanoscope analysis v120R1sr3, Bruker‐AXS, Santa Barbara, CA, USA).
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