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17 protocols using pemetrexed

1

In vitro analysis of mesothelioma cell lines

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Three human MPM cell lines (H28, H2452 and MSTO-211H) were obtained from ATCC (Manassas, VA) and cultured as previously described.26 (link) Human primary DMPM cultures (MesoII and STO) were derived from tumour samples of patients who underwent surgery, and were maintained in DMEM/F12 (Gibco) under standard culture conditions for less than 20 passages.24 (link) Cells were routinely tested for mycoplasma. Analyses of mitochondrial function and glycolysis of MSTO-211H and H2452 cells were performed with the Seahorse XFp Metabolic Flux Analyzer (Agilent Technologies, Santa Clara, CA), showing that these cells have both a normal aerobic metabolism and aerobic glycolysis, though to a different extent, as reported in the Supplemental Methods and Supplementary Fig. S1.
Co-transduction of MesoII cells with luciferase vectors and Firefly-luciferase (F-luc) activity assessment were performed according to previously established methods.23 (link),24 (link) Pemetrexed and gemcitabine were gifts from Eli Lilly (Indianapolis, IN), while the LDH-A inhibitors NHI-2 and NHI-Glc-2 were synthesised as described previously.17 (link),27 (link) Drugs were dissolved in sterile water (gemcitabine) or dimethyl sulfoxide (DMSO, Pemetrexed and LDH-A inhibitors) and diluted in culture medium immediately before use. In each experiment, we did not use concentrations higher than 0.1% DMSO.
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2

Metformin and Crystal Violet Assay

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Metformin hydrochloride and crystal violet were purchased from Sigma-Aldrich (St. Louis, MO, United States). Pemetrexed was obtained from Eli Lilly and Company (Indianapolis, IN, United States).
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3

Lung Adenocarcinoma Cell Line Cultivation

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The lung adenocarcinoma cell lines CL1-0, CL1-5, and A549 were provided by Dr. Cheng-Wen Wu and Dr. Pan-Chyr Yang [44 (link),45 (link),46 (link)]. Cells were grown in RPMI 1640 medium with 10% heat-inactivated fetal bovine serum and cultured at 37 °C in a humidified atmosphere with 5% CO2. The folate-deficient medium, RPMI 1640 medium without folic acid, was purchased from Gibco (Thermo Fisher Scientific, Waltham, MA, USA). Fetal bovine serum was dialyzed at 4 °C for 16 h against 10 volumes of sterile phosphate-buffered saline and used under the FD condition to minimize the amount of folate from exogenous sources. Pemetrexed from Lilly (Indianapolis, IN, USA). Gefitinib (Iressa) was obtained from AstraZeneca (Macclesfield, Cheshire, UK), and erlotinib (Tarceva) was obtained from Roche (Basel, Switzerland). Antibodies specific for E-cadherin (H-108), vimentin (V9), SLUG (A-7) (Santa Cruz Biotechnology, Dallas, TX, USA), N-cadherin (22200002) (Novus International, Saint Charles, MO, USA), Sox9 (EPR14335) (Epitomics, Wembley, London, UK), and actin (AC-15) (Sigma-Aldrich, St. Louis, MO, USA) were used in Western blot analysis.
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4

Solubilization and Use of Anticancer Agents

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MG132 was obtained from Calbiochem (#474790), solubilized in DMSO, and used at a working concentration of 10–25 μM. MLN4924 was generously provided by Takeda Pharmaceutical Company and solubilized in DMSO for in vitro experiments or 10% Captisol for in vivo experiments. GDC-0980 was generously provided by Genentech and was solubilized in DMSO for in vitro experiments or 0.5% methylcellulose with 0.1% Tween-80 for in vivo experiments. Cisplatin was obtained from the Sloan Kettering Pharmacy and solubilized in saline for in vivo experiments or from Sigma and solubilized in DMF for in vitro experiments. Pemetrexed (Alimta) was obtained from Eli Lilly and solubilized in saline for in vivo experiments.
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5

Recombinant Cytokine-Mediated Cell Signaling

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recombinant human M-CSF receptor (Sino Biological, Daxing, China), recombinant human M-CSF (BioLegend, San Diego, CA, USA), recombinant human IL-34 (BioLegend), pemetrexed (Eli Lilly and Company, Indianapolis, IN, USA), LY294002 (Cell Signaling Technology, Danvers, MA, USA), U0126 (Cell Signaling Technology), parthenolide (Sigma) and butein (Santa Cruz Technology, Dallas, TX, USA) were dissolved according to the manufacturer's instructions.
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6

Chemotherapeutics Cytotoxicity Screening

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On day one, 1000 cells were seeded into 96-well plates. On day two cells were treated with chemotherapeutics including Cisplatin (Accord Healthcare, Salzburg, Austria), Pemetrexed (Lilly, Indianapolis IN, USA) and Salinomycin (Sigma Aldrich) at varying concentrations. Untreated cells and cells treated with solvent of chemotherapeutics (vehicle control VC) served as controls. After 72 h, Prestoblue (Invitrogen, Vienna, Austria) was added according to manufacturer’s instructions and the fluorescence emission was measured on the FLUOstar omega plate reader (BMG-Labtech, Ortenberg, Germany). Half-maximal inhibitory concentrations (IC50) were calculated using GraphPad Prism6 non-linear regression analysis (variable Hill slope, four parameter fit). Experiments were done in five technical and three biological replicates.
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7

Pembrolizumab plus Carboplatin and Pemetrexed for NSCLC

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Using an interactive voice-response system, patients were randomly assigned (1:1) to treatment with pembrolizumab (Merck Sharp & Dohme Corp, a subsidiary of Merck & Co Inc, Whitehouse Station, NJ, USA) plus carboplatin and pemetrexed (Eli Lilly and Company, Indianapolis, IN, USA) or to carboplatin and pemetrexed alone. Randomisation was stratified by PD-L1 tumour proportion score (less than 1% vs 1% or greater), necessitating adequate tumour tissue for PD-L1 assessment. Treatment was allocated in blocks of four in each stratum via a schedule generated by Almac Clinical Technologies (Souderton, PA, USA) using a computerised randomised list generator. Patients, treating physicians, and representatives of the study funder were not masked to study treatment assignment but were masked to PD-L1 expression level. The funder was masked to aggregate data by treatment group during the study.
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8

Cytotoxic Agents Procurement Protocol

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5FUdR was purchased from Sigma Chemical Co. (St. Louis, Missouri, USA). Pemetrexed (Alimta, Eli Lilly and Co., Toronto, Ontario, Canada) was obtained from the London Health Sciences Centre pharmacy (London, Ontario, Canada). MX and FK866 were purchased from Sigma-Aldrich (St. Louis, Missouri, USA).
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9

Evaluating Combination Therapy for Tumor Regression

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An elapse of 15 days was allowed for the formation of detectable tumor nodules, assessed by IVIS® imaging. Mice were then weighed and stratified into treatment groups of ten animals. Treatment protocols were done from the 15th day to the 35th day, and mice were analyzed weekly by IVIS® imaging to assess tumor growth. One dose of KB9520 was used (10 mg/kg/day). KB9520 was dissolved in the vehicle (5% DMSO/40% PEG 400/55% water) and administrated once daily (days 15–35) by sub-cutaneous administration. 5 mg/kg cisplatin solution (Ebewe Italia srl, Roma, Italy) was administrated subcutaneously at day 18 and 25, respectively, and 150 mg/kg pemetrexed (dissolved in isotonic saline) (Eli Lilly, Houten, Nederland) was injected subcutaneously at days 19–23 and 26–30, respectively. Untreated animals were dosed with empty vehicle. At day 35 mice from the four groups were euthanized and necropsied. Tumors growing in the peritoneum were excised, and one part of the tumor tissues was immediately frozen and stored at −80°C for subsequent analysis.
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10

Preparation of Chemotherapeutic Agents

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Cisplatin (solvent: 0.9% aqueous NaCl solution) was purchased from Gry-Pharma (Kirchzarten, Germany), gemcitabine (solvent: 0.9% aqueous NaCl solution) from Lilly (Bad Homburg, Germany), vinflunine [solvent: phosphate-buffered saline (PBS)] from Pierre Fabre (Freiburg, Germany), pemetrexed (solvent: DMSO) from Lilly, methotrexate (solvent: PBS) from Hexal (Holzkirchen, Germany), carboplatin (solvent: 5% aqueous glucose solution) from Hexal, oxaliplatin (solvent: PBS) from Teva (Basel, Switzerland), paclitaxel (solvent: DMSO) from Bristol-Myers Squibb (New York, NY), topotecan (solvent: dH2O) from GlaxoSmithKline (London, United Kingdom), docetaxel (solvent: DMSO) from Sanofi (Paris, France), cabazitaxel (solvent: DMSO) from Sanofi, larotaxel (solvent: DMSO) from Shanghai Fuhe Chemistry Technology (Shanghai, China), vinblastine (solvent: PBS) from Teva, doxorubicin (solvent: 0.9% aqueous NaCl solution) from Sigma-Aldrich (St Louis, MO), mitomycin c (solvent: dH2O) from Medac (Wedel, Germany), and 5-fluorouracil (solvent: 0.9% aqueous NaCl solution) from Medac.
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