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6 protocols using amnis flowsight imaging flow cytometer

1

Multimarker Immunophenotyping of Fixed Cells

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Cells were gently collected and fixed for 30 min with ice-cold 4% paraformaldehyde. When necessary, cells were permeabilized with 0.1% Triton X-100 for 10 min on ice. After blocking with 3% BSA for 30 min, cells were incubated with primary antibodies overnight at 4 °C, then washed prior to incubation with secondary antibodies for 45 min at RT. Primary antibodies used were: chicken anti-integrin α-M (1:500, Aves), mouse anti-GFAP (1:500, Cell Signaling), rabbit anti-BDNF (1:500; S. Cruz), goat anti-TNFα (1:250; S. Cruz), rabbit anti-Iba1 (1:300; Novus Biologicals, NBP2-19019). Antibodies were appropriately combined in multiple labeling experiments. Secondary antibodies used were: PE-anti-chicken (1:200; S. Cruz), FITC-anti-goat (1:200; S. Cruz sc-2024), Alexa-Fluor 647-anti-rabbit (1:500; Invitrogen A31573), PE-anti-mouse (1:300; S. Cruz sc-3738). Data was acquired on the Amnis FlowSight® Imaging Flow Cytometer and analyzed with IDEAS® Software (Millipore).
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2

Broiler's Intestinal Immune Profiling

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The cellular mucosal immune system status of the broiler's intestinal tract, intraepithelial lymphocytes (CD3+ T lymphocytes, CD3+CD8+ cells, CD3+CD4+ cells, and CD3+CD4+CD8 cells) were measured. At post mortem, intraepithelial T lymphocytes were estimated from isolated jejunum of 40 birds (1 bird per cage) at 42 d of age according to the method defined by Röhe (2014) . The intestinal cell suspensions were stained with either a cocktail of T lymphocyte CD marker antibodies (CD3-AF647, CD4-FITC and CD8-PE; Southern Biotech, Birmingham, AL, USA) or a cocktail of isotype control antibodies (IgG1-PE, IgG1-FITC, and IgG1-AF647; Southern Biotech, Birmingham, AL, USA) for 30 min on ice in the dark according to the manufacturer's instructions.
Flow cytometric data were acquired on an Amnis FlowSight imaging flow cytometer (Millipore, Burlington, Massachusetts, USA). CD4-FITC and CD8-PE were detected using the 488 nm laser, and the CD3-AF647 was detected using the 633 nm laser. Signals from the isotype antibody cocktail were subtracted from the T lymphocyte CD antibody fluorescence. From the total cell population that was acquired, the CD3+ intact cell population was gated. Sub-gates were applied to the intact CD3+ cells population to determine the proportion of cytotoxic T lymphocytes (CD3+CD8+), T helper lymphocyte (CD3+CD4+) and double-stained T lymphocytes (CD4+CD8+).
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3

p21 and p53 Expression Analysis in BJ Cells

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BJ cells (106 cells) were fixed using 4% solution of p-formaldehyde in PBS containing 0.01% Triton X-100 at room temperature for 10 min, washed using PBS and suspended in 70% ethanol at 4 °C for 20 min. To avoid unspecific binding, fixed cells were pre-incubated with 1% BSA in PBS for 20 min and then incubated with primary antibodies anti-p53 (1:200, MA5-12557) and anti-p21 (1:200, MA5-14949) at room temperature for 1 h and secondary antibody conjugated to Alexa Fluor Plus 488 (1:1000, A32723, A32731) (Thermo Fisher Scientific, Warsaw, Poland) at room temperature for 1 h. Fixed cells were then stained using 5 μg/ml PI solution for 10 min. Digital cell images were captured and intracellular localization of p21 and p53 was analyzed using flow imaging cytometry (Amnis® FlowSight® imaging flow cytometer and IDEAS software version 6.2.187.0, Merck Millipore, Warsaw, Poland).
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4

Microalgal Cell Size Analysis

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The size of microalgal cells was analyzed using an Olympus BX61 differential interference contrast microscope equipped with a DP72 CCD camera and Olympus CellF (Olympus, Warsaw, Poland). Moreover, the subpopulations of cells in terms of their cell size and formation of cell aggregates were investigated using Amnis® FlowSight® imaging flow cytometer and IDEAS software version 6.2.187.0 (Merck Millipore, Warsaw, Poland). 10,000 events were analyzed for each sample triplicate using two channels (bright field), namely Ch01 (435–480 nm) and Ch09 (570–595 nm) with the 488 nm and 642 nm lasers. Five subpopulations of cells were considered, namely single cells sized 5–10 µm (R1), single cells sized 1–5 µm (R2), large single cells sized 10–15 µm and autosporangia (R3), cell aggregates sized over 15 µm (R4) and dividing cells with autospores (R5). Representative dot plots and cell images are presented.
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5

Mitochondrial Permeability Transition Pore Assessment

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Mitochondrial permeability transition pore opening was assed using the calcein assay with CoCl2 quenching (LifeTechnologies) where loss of calcein fluorescence directly indicates opening of the mPTP. Where specified, MEFs were pre-treated with 0.4 mM H2O2 for 8 hr in the absence or presence of 2 µM CsA as previously described[7 (link)] and the absence or presence of 10 µM Gamitrinib. The cells were labeled with calcein for 30 min at 37 °C in Hanks’ balanced salt solution with 10 mM Hepes pH 7.4 and 0.1 µM calcein as described[79 (link)]. Fluorescence was detected by an EMD Millipore Amnis FlowSight Imaging Flow Cytometer using the manufacturer’s instructions and the supplied IDEAS analysis software. The fluorescent signal was normalized to CoCl2 bleached, unstressed untreated cells as maximum signal.
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6

Annexin V-7AAD Staining of CD8+ T Cells

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Spleen cells were isolated as described before and stained for H2-Kb SIINFEKL-specific CD8+ T cells. Cells were washed and resuspended in annexin staining buffer and stained with annexin V (Life Technologies) and 7-AAD (BioLegend).
For in vitro analysis cells were stimulated for three days with anti-CD3/CD28 or 2 h with CD95L, respectively. Staining was done as described above. IFC was performed on Amnis FlowSight Imaging Flow Cytometer (EMD Millipore).
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