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37 protocols using gapdh

1

Western Blotting of Coronin-3 and GAPDH

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Western blotting was performed as described previously [6 (link)]. Coronin-3 (Cat:14749–1-AP, Proteintech) and GAPDH (Cat#: YM3029, Immunoway) were used as primary antibodies, the HRP-labeled secondary antibodies were used to detect the chemiluminescence signals.
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2

Western Blot Analysis of Cellular Proteins

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Tissues and cells were lysed in lysis buffer (125 mM Tris-HCl pH 6.8, 25% glycerol, 5% SDS) supplemented with protease inhibitor (Roche, Switzerland). Lysates were separated on sodium dodecyl sulfate polyacrylamide gels and transferred to methanol-activated nitrocellulose membranes (HAHY00010; Millipore, Merck KGaA, Darmstadt, Germany). Membranes were blocked in PBS containing 1% Tween-20 and 5% milk for 1 h and incubated with primary antibodies overnight at 4°C. After 1 h of incubation with donkey anti-mouse or donkey anti-rabbit secondary antibodies (IRDye 800; LI-COR Biosciences, Lincoln, NE, United States), signals were imaged using an Odyssey infrared imaging system (LI-COR Biosciences) at a wavelength of 700/800 nm. The primary antibodies used were: SREBP1 (ab96777, Abcam; sc-557036, Santacruz), phospho-Akt (4060, Cell Signaling Technologies), Akt (40D4, Cell Signaling Technologies), and GAPDH (YM3029, Immunoway).
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3

Cytotoxicity Assay of Complex 5 in MDAMB231 Cells

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MDAMB231 cells were seeded into culture flask. After incubation for 24 h, the cells were treated with complex 5 (10 μM–120 μM) for 24 h. Then the cell lysate was obtained and the protein concentration was measured. The same amount of protein (20 μg) was separated from 10% SDS-PAGE gel and transferred to polyvinylidene fluoride (PVDF) membrane (MilliporeCorporation, United States). The imprinting was sealed in a closed buffer at room temperature for 2 h, and then incubated with the diluted solution (1:500–1:1000) of Caspase-3 (abcam, 96625), Bax (genetex, 109683), Bcl-2 (genetex, 100629), HO-1 (abcam, 68477). The antibody (US) blocked the buffer overnight at 4°C. Then the membranes were incubated with the appropriate secondary antibody (1:5000–1:10000 dilution), and GAPDH (immunoway, B1501) was used as a loading control. The protein bands were visualized by X-ray dark box (11–14 of Shantou Yongtai Medical Instrument Co., Ltd.).
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4

Evaluating Extracellular Matrix in NPCs

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Immunofluorescence staining was used to assess the expression of Col-II and aggrecan (Zen-bio, Sichuan, China) in the NPCs. Western blotting was used to evaluate the expression of Col-II, aggrecan, MMP-3 (Proteintech, Wuhan), MMP-13 (Proteintech, Wuhan), and GAPDH (Immunoway, Jiangsu). Subsequently, RT-qPCR with fluorescence detection was performed to assess the expression of ECM-related genes. Expression was analyzed using the 2−ΔΔCt method.
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5

Skin Protein Extraction and Western Blot

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Total protein from skin tissues was extracted using RIPA buffer containing phosphatase and protease inhibitors. Lysates were then centrifuged at 12,000 g for 10 min. Protein concentrations were measured using the Pierce BCA Protein Determination Kit (Cat. No.23227, Thermo Scientific, USA). 50 μg of total protein/well were then separated using a 10%/12% sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) and transferred onto PVDF membranes. PVDF membranes were blocked in 5% skim milk for 1 h at room temperature and then incubated with primary antibodies against GAPDH (1:5,000, ImmunoWay Biotechnology Company, USA), SP (1:1000, Cell Signaling Technology, USA); or NK1R (1:2000, Cell Signaling Technology, USA) overnight at 4 °C. Membranes were then washed with Tween 20 wash buffer and then incubated with secondary anti-rabbit IgG (H + L) (111-035-003, Jackson Immuno Research Laboratories, West Grove, PA, USA; 1:10,000) or goat anti-mouse IgG (H + L) (115-035-003, Jackson ImmunoResearch Laboratories; 1:10,000) at room temperature for 1 h. Immunofluorescence was measured using an Odyssey infrared imaging system (LI-COR Biosciences, Lincoln, NE, USA). Specific protein bands were quantified using the ImageJ one analysis software.
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6

Colon Tissue Protein Extraction and Analysis

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Protein was extracted from colon tissue using a radioimmunoprecipitation assay (RIPA) lysis buffer. The primary antibodies were Interleukin-10 (IL-10), tumor necrosis factor-α (TNF-α), NF-E2-related factor 2 (Nrf-2, 1:1200, Immunoway Biotechnology, Plano, TX, USA), glyceraldehyde phosphate dehydrogenase (GAPDH, 1:3000), and the secondary antibodies conjugated to horseradish peroxidase (1:3000, Immunoway Biotechnology). The other proteins were normalized using GAPDH.
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7

Protein Expression Analysis by Western Blot

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Cells were lysed in ice-cold RIPA buffer, and 20 µg protein was separated by electrophoresis on 8–12% denaturing SDS-PAGE gels. The blots were probed with primary antibodies overnight at 4ºC, followed by incubation with the appropriate secondary antibodies at room temperature for 1 h. The antibodies used in this study included DLX1 (Cat: 13046-1-AP, Proteintech) and GAPDH (Cat: YM3029, Immunoway).
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8

Western Blot Analysis of Neuropeptides

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Total protein was extracted using a lysis buffer and the protein concentrations were quantified by the Pierce BCA Protein Assay Kit (Cat. No. 23227, Thermo Scientific, USA). Samples were separated by 10 percent sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) and transferred to a nitrocellulose (NC) filter membrane. Next, the membranes were blocked in 3 percent bovine serum albumin and incubated with the following respective primary antibodies: Substance P (1:1000, Affinity, Cat. No. DF7522, USA), Neurokinin A (1:1000, Cell Signalling Technology, Cat. No. 3540, USA), and GAPDH (1:20000, ImmunoWay Biotechnology Company, Cat. No. YM3029, USA) at 4°C overnight. After washing with Tween 20 supplemented Tris-buffered saline (TBS-T), the membranes were incubated with secondary antibodies at room temperature for 40 min. Immunofluorescence was assessed using an Odyssey infrared imaging system (LI-COR Biosciences, Lincoln, NE, USA).
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9

Western Blot Analysis of Apoptosis and Autophagy

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Immediately after the animals were sacrificed, the flap tissue of area II was collected and analyzed by Western blot. For Western blot analysis, each sample was treated with lysis buffer to release tissue proteins and the protein concentration was measured by a BCA method. Next, gel electrophoresis was used to separate the proteins, which were then electrotransferred to PVDF membranes and blocked with nonfat milk 5%. The samples were eluted with TBST three times and incubated at 4 °C after adding the primary antibody solution. The incubation concentration of the primary antibody is as follows: Bax (1:1000, Immunoway), Bcl-2 (1:1000, Immunoway), β-actin (1:5000, Immunoway), VEGF (1:1000, Immunoway), Nrf2 (1:1000, Immunoway), LC3B(1:2000, Abcam), SQSTM1/p62 (1:30,000, Abcam), CTSD (1:5000, Abcam), GAPDH (1:5000, Immunoway). Subsequently, secondary antibodies conjugated to HRP were incubated with the samples for 2 h at room temperature. Finally, an ECL kit was used to visualize the bands on the membrane, and the intensity of the bands was quantified using Image Lab software.
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10

Synergistic Anticancer Effects of ASTA and TETD

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ASTA and disulfiram (TETD) were obtained from MedChemExpress (New Jersey, USA). The purity of these compounds was >95%. ECL chemiluminescence kit, DAPI fluoromount-GTM mounting medium, cell counting kit-8 (CCK-8), and dimethyl sulfoxide (DMSO) were obtained from YEASEN (Shanghai, China). Hoechst 33342 was purchased from Solarbio (Beijing, China). Fetal bovine serum (FBS) was obtained from ExCell Bio (Shanghai, China). RPMI medium modified (1640) was obtained from Hyclone, Thermo Scientific (MA, USA). A cell cycle staining kit was provided by Multi Sciences (Hangzhou, China). Antibodies against caspase 4, caspase 11, gasdermin D, GAPDH, and HRP-labeled goat antirabbit IgG (H + L) were obtained from Immunoway (Plano, TX, USA). Antibodies against cyclin A2 (CCNA2), cyclin B1 (CCNB1), and cyclin E1 (CCNE1) were purchased from HUABIO (Hangzhou, China).
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