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7 protocols using nycodenz solution

1

Isolation of Primary Mouse LSEC

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Primary mouse HSC and HC were isolated by pronase/collagenase perfusion digestion followed by density gradient centrifugation, as previously described [17 (link)]. In brief, primary LSEC were isolated from the 8-week-old Balb/c mice by in situ perfusion with 30 ml SC1 solution and 30 ml 0.05% Collagenase IV solution sequentially. The cell suspension was centrifuged at 50g for 4 min and then the supernatant was centrifuged at 500g for 8 min at 4 °C. Pelleted cells were resuspended in 10 ml of 18% Nycodenz solution (Sigma-Aldrich, St. Louis, MO, USA); 6 ml of 12% Nycodenz solution, 6 ml of 8% Nycodenz, and 4 ml of DMEM were orderly loaded on the top of the cell suspension. The added gradient centrifugal liquid was centrifuged at 1450g and 4 °C for 22 min without brake. LSECs were recovered from the interface between the 8 and 12% Nycodenz solutions, mixed with an equal volume of DMEM and centrifuged at 600g for 6 min at 4 °C. Cells were resuspended and incubated with anti-CD146 magnetic beads (Miltenyi Biotec, Bergisch Gladbach, Germany). Finally, LSEC were cultured in collagen IV-coated plates with LSEC medium, and cell viability was determined by the trypan blue exclusion method.
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2

Isolation and Culture of Primary Mouse Hepatic Stem Cells

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Primary mouse HSCs were isolated by pronase/collagenase perfusion digestion, followed by density gradient centrifugation23 Briefly, liver tissues were initially digested in situ with 0.05% pronase E (Roche, Shanghai, China) and 0.03% collagenase type IV (Sigma–Aldrich, Shanghai, China) and then further digested with collagenase type IV, pronase E, and DNase I (Roche) at 37 °C in a shaking bath for 20 min. HSCs were isolated from nonparenchymal cells using Nycodenz solution (Sigma–Aldrich) at 4 °C due to the presence of massive amounts of vitamin A-storing lipid droplets. Primary HSCs were cultured in high-glucose Dulbecco’s modified Eagle’s medium containing 10% FBS and 1% penicillin–streptomycin and were maintained in a humidified incubator with 5% CO2 at 37 °C.
The isolation and culture of primary hepatocytes was performed according to the technical patent of this research team (2017.03.08, National Invention Patent, CN201510418641.3).
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3

Isolation of Hepatic Stellate Cells from Mouse Liver

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HSCs were isolated from 32-week old male Balb/c mice or mice treated with control or fish oil diet by in situ pronase, collagenase perfusion and Nycodenz gradient as previously reported50 (link) . Liver was initially in situ digested with 0.05% pronase E (Roche, Mannheim, Germany), 0.03% collagenase type IV (Sigma-Aldrich, St. Louis, MO, USA) and then further digested with collagenase type IV, pronase E and DNase I (Roche, Mannheim, Germany) solution at 37 °C bath shaking for 20 minutes. After hepatocytes were pelleted by centrifugation 50 g for 4 minutes, the supernatant containing nonparenchymal cells was further centrifuged at 500 g for 5 minutes. HSCs were isolated from nonparenchymal cells using 8.2%, 12% and 18% Nycodenz solution (Sigma-Aldrich, St. Louis, MO, USA) at 1450 g and 4 °C without brake for 22 minutes. The purity of HSCs was higher than 95% evaluated by retinoid autofluorescence. Cell viability was determined by the trypan blue exclusion method. HSCs counting were performed with a hemocytometer.
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4

Isolation of Primary Mouse Hepatic Stellate Cells

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Pronase/collagenase perfusion digestion was used to isolate primary mouse HSCs, followed by density gradient centrifugation, as previously described.33 In brief, liver tissues were first digested in situ with 0.05% pronase E (Roche, Shanghai, China) and 0.03% collagenase type IV (Sigma-Aldrich, Shanghai, China), and then further digested for 20 minutes at 37°C in a shaking bath with collagenase type IV, pronase E, and DNase I (Roche). Due to a large amount of vitamin A–storing lipid droplets in nonparenchymal cells, HSCs were isolated from them using Nycodenz solution (Sigma-Aldrich) and 4°C. Primary HSCs were cultured in a humidified incubator with 5% CO2 at 37°C in high-glucose Dulbecco’s modified Eagle’s medium containing 10% fetal bovine serum and 1% penicillin/streptomycin.
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5

Isolation and Purification of Parasite Genomic DNA and RNA

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Parental strains and growth rate- or immune-selected recombinant parasites were grown in naïve mice. Parasite-infected blood was passed through a single CF11 cellulose column to deplete host leukocytes, and the genomic DNA (gDNA) was isolated from the saponin-lysed parasite pellet using DNAzol reagent (Invitrogen, Carlsbad, CA, USA) according to the manufacturer’s instructions. For RNA isolation, a schizont-enriched fraction was collected on a 50% Nycodenz solution (Sigma Aldrich) and total RNA was then isolated using TRIzol (Invitrogen).
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6

Isolation of Mouse Hepatic Cells

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Primary mouse HSCs and HCs were isolated by pronase/collagenase perfusion digestion followed by subsequent density gradient centrifugation, as previously described 30 . In brief, 40-week-old male Balb/c mice used in the study received human cares. Liver was initially in situ digested with 0.05% pronase E (Roche, Mannheim, Germany), 0.03% collagenase type IV (Sigma-Aldrich, St. Louis, MO, USA) and then further digested with collagenase type IV, pronase E and DNase I (Roche, Mannheim, Germany) solution at 37°C bath shaking for 20 minutes. Subsequently, HSCs were isolated from nonparenchymal cells using 8.2%, 12% and 18% Nycodenz solution (Sigma-Aldrich, St. Louis, MO, USA) at 1450 g and 4°C without brake for 22 minutes. In addition, the purity of the isolated population was tested by the characteristics of star-like shape, perinuclear lipid droplets and α-SMA staining. HCs were isolated from the 10-week-old Balb/c mice by in situ perfusion with 30 ml SC1 solution and 30 ml 0.05% Collagenase IV solution sequentially. HCs were then pelleted by centrifugation 50 g for 4 minutes three times. Cell viability was determined by the trypan blue exclusion method.
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7

Mouse Cardiac Cell Isolation and Analysis

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Mouse hearts were rinsed in situ with HBSS with 1% heparin. Explanted hearts were cut into small pieces and digested for 40 minutes at 37°C with 400 U/ml collagenase IV (Sigma-Aldrich), 10 mM HEPES (Cellgro), and 0.01% DNase I (MP Biomedicals) in HBSS (Cellgro). Digested suspensions were passed through a nylon mesh and centrifuged, and the cell pellet was resuspended in 5 ml 45.5% Nycodenz solution (Sigma-Aldrich). Complete DMEM (3 ml) was added to the top of the Nycodenz, and gradient centrifugation was performed (1,700 g for 15 minutes at 4°C). The cells at the interface were recovered, washed with complete DMEM, stained, and analyzed by flow cytometry (BD LSR-II; BD Biosciences).
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