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5 protocols using anti sca 1 pe cy7

1

Multiparameter Flow Cytometry of Lung Cells

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Lung cells were stained with FITC-conjugated antibodies for lineage markers (CD3ε, TCRβ, B220/CD45R, Ter-119, Gr-1/Ly-6G/Ly-6C, CD11b, CD11c, F4/80 and FcεRIα, from Biolegend), anti-CD25-PerCP-Cy5.5 (Biolegend), anti-CD127-PE-Cy5 (eBioscience, San Diego, CA), anti-c-kit/CD117-APC (eBioscience), anti-sca-1-PE-Cy7 (eBioscience), anti-T1/ST2-PE (R&D Systems, Minneapolis, MN) and anti-IL-17RB (R&D Systems) conjugated with AF750. Cells were fixed, subjected to flow cytometry and analyzed on a FACSAria II (BD Biosciences, San Jose, CA). For analysis of intracellular IL-13, fresh aliquots of lung mince were stimulated for 5 h with cell stimulation cocktail (40.5 μM phorbol 12-myristate 13-acetate, 670 μM ionomycin, 5.3 mM brefeldin A, 1 mM monensin, eBioscience), fixed, permeabilized and incubated with anti-mouse IL-13 clone eBio13A (eBioscience).
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Multiparametric Flow Cytometry Analysis

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For the analysis of surface markers, anti-cKit-PE, anti-Sca-1-PE-Cy7, anti-Mac-1-PE-Cy7, anti-Gr1-PE-Cy7, anti-Ly5.2-APC (all from eBioscience) antibodies were used at a working dilution of 1:200 in PBS. Cells were stained according to standard methods. Signal was acquired by FACSCalibur or FACSCanto (BD Bioscience) and analyzed by Cell Quest software (BD Bioscience).
GFP-positive cells were sorted on MoFlo Astrios (Beckman Coulter) or FACSAria (BD Bioscience) flow sorters.
For apoptosis evaluation, cells were resuspended in annexin buffer (10 mM HEPES, 150 mM NaCl, 1mM MgCl2, 3.6 mM CaCl2, 5mM KCl) and stained with Annexin-APC (eBioscience) diluted 1:50 in annexin buffer for 1 hour. Cells were then washed and resupended in PI (eBioscience) 0.1 μg/mL in PBS buffer and acquired immediately at FACSCalibur or FACSCanto. Cell cycle was assessed using the BrdU incorporation (10 minute pulse) method following standard protocols.
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Multiparameter Flow Cytometry Analysis of Leukemia

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For evaluation of MLL-AF9-transduced leukemia development, either peripheral blood or BM cells were stained with anti-Mac-1-APC, anti-Gr-1-PE, anti-CD3-APC, anti-B220-PE or anti-c-Kit-PE monoclonal antibodies (eBioscience) for the analyses of the myeloid and lymphoid lineages, differentiation, and cell frequencies of Mac-1 + c-Kit + LICs. For examination of Lin À CD127 À Sca-1 À c-Kit + CD16/32 + CD34 + L-GMP cells, BM leukemia cells were stained with biotinylated anti-CD3, anti-CD8, anti-B220, anti-Gr-1, anti-Ter119 and anti-CD127 antibody followed by staining with streptavidin-PE/Cy5.5, anti-Sca-1-PE/CY7, anti-c-Kit-APC, anti-CD16/ 32-eFluo450 and anti-CD34-PE (eBioscience). To determine the ratios of SoNar fluorescence, cells were excited at 405 nm/488 nm and acquisited at 525 nm (for SoNar sensor), or excited at 405 nm/561 nm and acquisited at 525 nm/610 nm (for SoNar-mCherry sensor), respectively. The mean fluorescence intensities and ratio (405/561) histograms were analyzed for the calculation of SoNar's signal by using FlowJo software v10. For the evaluation of homing ability, CXCR4 antibody (eBioscience) was used. The cell cycle status of SoNar-high and low AML cells were measured by staining with Hoechst 33342/Pyronin Y as previously described (Zheng et al., 2011) .
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Multipotent Cell Phenotyping in Bone Marrow

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Bone marrow (BM) cells were flushed out from tibiae and femurs with PBS. Red blood cells were lysed using lysis buffer (ThermoFisher Scientific A1049201). After washing with PBS, cells were suspended in PBS with 2% FBS. Cells were stained with various fluorescein-labeled antibodies (Abs) and subjected to flow cytometric analysis using Becton-Dickinson FACSCanto II Cytometer [20 ]. APC-anti-CD45, PE-anti-CD105, PE-cy7-anti-Sca-1, PE-anti-CD11b, PE-cy5-anti-Gr1, PE-anti-CD3, PE-anti-B220 Abs and anti-αSMA were purchased from eBioscience. PE-anti-Goat, APC-anti-Rabbit, PE-anti-mouse anti-PDGFRβ Abs were purchased from Santa Cruz Biotechnology. Anti-LeptinR Ab was purchased from Abcam. Results were analyzed by Flowjo7 data analysis software (Ashland, OR). For cell sorting, cells were stained with APC-anti-CD45 Ab and CD45−GFP+ cells were sorted by Becton-Dickinson FACSAria III sorter [20 ].
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5

Multicolor Flow Cytometry Analysis

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APC-anti-CD45, PE-anti-CD105 and PE-cy7-anti-Sca1 antibodies (Abs) are purchased from eBioscience. Callus and BM cells are stained with various fluorescein-labeled Abs and subjected to flow cytometric analysis using a Becton-Dickinson FACSCanto II Cytometer, according to the manufacturer’s instructions. Results are analyzed by Flowjo7 data analysis software (FLOWJO, LLC Ashland, OR). For cell sorting, BM cells from Nestin-GFP mice are sorted using a Becton-Dickinson FACSAria III sorter, according to the manufacture’s instructions [29 ].
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