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3 protocols using quick western kit irdye 680rd

1

Western Blotting of Tumor Cell Lysates

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Western blotting was performed as previously described4 (link) with slight modifications: unless otherwise noted, protein lysates from tumor cells were extracted using 1X Cell Lysis Buffer (CST 9803) supplemented with PhosSTOP phosphatase inhibitors (Sigma) and cOmplete™, Mini EDTA-free Protease Inhibitor Cocktail (Sigma), and samples were normalized by total protein concentration measured by the Bio-Rad Protein Assay Dye Reagent (Bio-Rad 5000006) or equal numbers of nuclei, as indicated.
Primary antibodies used include cleaved-PARP (CST 9541), Bcl-xL (Abcam ab32370), RB (CST 9309), Lamin A/C (CST 4777), JunB (CST 3753), c-Jun (CST 9165), Fra-2 (CST 19967) and vinculin (Sigma V9131). Primary antibodies were used at 1:1,000, except vinculin, which was used at 1:5,000. Secondary antibodies used include Quick Western Kit IRDye 680RD (Licor 926–68100) used at 1:1000, Mouse IgG (H&L) Antibody DyLight™ 800 Conjugated (Rockland 610–145-002) used at 1:5,000, and Goat anti-Rabbit IgG (H+L) Highly Cross-Adsorbed Secondary Antibody, Alexa Fluor 680 (Invitrogen A21109) used at 1:3,000. Secondary antibodies with different lot numbers were used and consistent results were observed. Western blot images were acquired on the Odyssey CLx Imaging System (LI-COR Biosciences) and processed using ImageStudio Lite v5.2.5 software.
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2

IP of ALK5 and HIF-α Regulation

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For immunoprecipitation (IP), ACHN cells were transfected with ALK5-HA or co-transfected with ALK5-HA and siVHL, followed by starvation for 12h and stimulation with TGF-β for 6h. A498 cells were transfected with ALK5-HA or co-transfected with ALK5-HA and VHL, followed by starvation for 12h and stimulation with TGF-β for 6h.
For IP, total cell lysate was prepared from the collected cells and immunoprecipitated using the indicated antibody. Immunoblotting was performed and then probed with either HA (CST #2367) or HIF-1α (NB100-134, Novus Biologicals) or HIF-2α (NB100-132, Novus Biologicals) or ALK5 (V22) antibody. The primary antibodies were detected by Quick Western Kit–IRDye® 680RD (#926–68100, Licor Biosciences) following manufacturer’s instructions.
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3

Immunoblotting of Epigenetic Regulators

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Immunoblotting was performed to detect protein expression using the Quick Western Kit–IRDye® 680RD (LI-COR Biosciences) following standard protocol. Primary antibodies used were: anti-SETD7 (a gift from Dr. Susanne Gräslund at SGC), anti-H3K4me1, anti-Histone H3, anti-NFE2L2, Anti-PPARGC1A (Abcam), anti-DDK (Origene), anti-SOD2 (Abcam). Membrane transfer was performed on iBlot 2 Gel Transfer Device with iBlot 2 Transfer stacks (PVDF) (Life Technologies). Imaging analysis was performed on the Odyssey CLx Infrared Imaging System using Image Studio Ver 3.1 (LI-COR Biosciences).
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