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16 protocols using dmem glutamax

1

Induction and Selection of Bacterial Strains

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The strains used in this study are detailed in Table S1 in the supplemental material. The plasmids used in this study are described in Table S2. To induce T3SS expression, EHEC TUV93-0 was grown in minimal essential medium (MEM)-HEPES (Sigma, St. Louis, MO) with 5.62 g/liter of l-glutamine and EPEC was grown in Glutamax-Dulbecco modified Eagle medium (DMEM) (Sigma) at 37°C at 180 rpm. C. rodentium was also grown in Glutamax-DMEM (Sigma) and was cultured statically at 37°C with 5% CO2. Growth and cell viability assays were carried out in lysogeny broth. For selection of plasmids, chloramphenicol or ampicillin was included at 20 or 50 μg/ml, respectively.
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2

Cytotoxicity of Plant Extracts on Colon Cancer Cells

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The cytotoxicity of the plant extracts was estimated on two different types of human colon cancer cells (HCT-116 and Caco-2). The test was performed as reported by Dawra et al. [26 (link)]. The cell growth was assessed by the MTT assay. MTT is a yellow water-soluble tetrazolium salt that is reduced by the mitochondrial dehydrogenases of intact cells to a purple formazan product. The cells were introduced in a 96-well plate at 3.104 cells/well in a volume of 100 μL of a suitable culture medium. After that, 100 μL of the same culture medium containing the plant extract was added. The final concentration of the extract in each well was 50 μg/mL. The culture media used were, respectively, RPMI 1640 for the HCT-116 cells and Dulbecoo’s modified Eagle’s medium GlutaMAX (DMEM) for the Caco-2 cells (Sigma Aldrich, Saint Louis, Missouri, USA). Tamoxifen was used as a positive reference. The microplate was incubated at 37 °C for 48 h. The supernatant was then removed and 50 µL of the MTT solution was added, followed by an incubation of 40 min. The absorbance was measured at 605 nm. The inhibition percentage of the cells’ proliferation was calculated as follows:  % INB=100×(AblankAsampleAblank) .
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3

In Vitro Antioxidant Evaluation

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The reagent grade chemicals and cell culture compounds used, namely Dulbecco’s Modified Eagle’s Medium (DMEM + GlutaMAX™), antibiotic solution (penicillin-streptomycin), non-essential amino acids (NEAAs), 4-(2-hydroxyethyl)-1-piperazineethanesulfonic acid (HEPES), fungizone, trypsin/EDTA solutions, Phosphate Buffer Saline (PBS), Fetal Bovine Serum (FBS), methylthiazoltetrazolium salt (MTT) dye and dimethyl sulfoxide (DMSO), were purchased from Sigma-Aldrich (St. Louis, MO, USA). Deionized water (resistivity <18 MW cm) was obtained by filtering tap water through a Milli-Q water purification system (Millipore, Bedford, MA, USA). Standards of vit C (176.12 g/mol), vit E (430.71 g/mol), QUE (338.27 g/mol) and RSV (228.24 g/mol) were purchased from Sigma-Aldrich (St. Louis, MO, USA). Protein hydrolyzates based on hydrolyzed salmon fish protein with added vitamin C and vitamin D3 (product 1), hydrolyzed salmon and mackerel fish protein with added vitamin C and vitamin D3 (product 2), hydrolyzed salmon and blue whiting fish protein with added vitamin C and vitamin D3 (product 3) and flounder skin collagen were kindly provided by NOFIMA (Norway). Stock solutions of antioxidants vit E, QUE and RSV were freshly prepared in DMSO and stock solution of vit C was prepared in H2O at appropriate working concentrations while maintained in darkness at 4 °C.
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4

Culturing and Cryopreservation of Human Vascular Cells

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Cells were cultured at 37°C in a humidified 5% CO2 environment. Cell-type specific culture medium was refreshed every 2–3 days. Cells were passed at 90–100% (HUVECs, HUAECs, and HUASMCs) or 70–80% confluency (HUAFIBs). HUVECs, HUASMCs, and HUAFIBs were used up to passage six and HUAECs up to passage three. Stocks of isolated HUVECs, HUASMCs, and HUAFIBs up to passage four and HUAECs up to passage two were stored at −180°C in DMEM GlutaMAX™ containing 20% FBS and 10% DMSO (Sigma).
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5

Neonatal Mouse Cortical Neuron Isolation

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Whole cortices of neonatal mice (P1–P6) were dissected and dissociated employing an enzymatic solution containing papain (25 U/ml in DMEM-GlutaMAX™ (Gibco), 1.65 mM L-cysteine (Sigma-Aldrich), 1 mM CaCl2, 0.5 mM EDTA). After 20 min at 37 °C, the enzymatic solution was replaced by an inactivating solution (DMEM-GlutaMAX™, 2.5 mg/ml BSA (Sigma-Aldrich), 2.5 mg/ml trypsin inhibitor (Sigma-Aldrich), 10% fetal bovine serum (FBS, PAA Laboratories), 100 U/ml penicillin/streptomycin (Invitrogen), 1× MITO+ (BD Biosciences)), and incubated for 5 min at room temperature. The supernatant was discarded and the tissue was sheared in FBS-medium (DMEM-GlutaMAX™, 10% FBS, 100 U/ml penicillin/streptomycin, 1× MITO+). After tissue parts settled down, the supernatant was centrifuged (5 min, 157×g) and the cell pellet was resuspended in FBS-medium. The cells were seeded on poly-l-lysine (PLL)–coated (0.5 ng/ml, Sigma-Aldrich) well plates in FBS-medium. Thirty minutes after incubation (37 °C, 5% CO2), the FBS-medium was replaced by NBA-medium (NeurobasalA® (Gibco), B27 (Invitrogen), GlutaMAX™ (Invitrogen), 100 U/ml penicillin/streptomycin). Half of the NBA-medium was exchanged with fresh medium 24 h later (day in vitro, DIV2).
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6

Screening Immune Responses to Chaga Polysaccharides

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HEK-Blue™ reporter cell lines (InvivoGen) transfected with human TLR2, human Dectin1a, human TLR4/CD14/MD2 or non-transfected (null-1) were cultured and maintained using DMEM GlutaMAX™ containing 10% FBS (Sigma-Aldrich), Normocin (100 μg/mL) and HEK-Blue™ selection antibiotics. Experiments were carried out according to the manufacturer’s instructions. Briefly, I. obliquus polysaccharides (20 µL) at various concentrations were added to wells in 96-well plates (Costar). Then, the reporter cells were gently washed with warm PBS before suspended in HEK-Blue™ Secreted Embryonic Alkaline Phosphatase (SEAP) detection medium. Finally, 180 µL 5 × 104 reporter cells were added per well containing polysaccharides. After incubation for 16 h (37 °C, 5% CO2), SEAP was detected colorimetrically at A635. The experiments were carried out at least three times.
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7

Dermal Sensory Neuron Activation by Allergens

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DRG of mice were cultured as described above, rinsed in Hanks Balanced
Salt Solution (HBSS; Sigma), and incubated in L-cysteine containing 1% Papain
(Sigma) for 10 minutes at 37°C. After a wash with filtered
Leibovitz’s L-15 Medium (Gibco) containing 10% FBS (Sigma), they were
incubated in HBSS containing collagenase (1 mg/ml; Sigma) and dispase (4 mg/ml,
Sigma) at 37°C for 10 min. After titration, cells were plated in a
Poly-D-lysine-laminin (Sigma)-coated 12 well-plate (Corning) and recovered with
the complete culture media (DMEM-Glutamax, 2.5% FBS, 1% pen/strep and ARAC,
FUDR, uridine – 10 μM each; all from Sigma). Cells were incubated
for 5 minutes with vehicle or 5 ng/ml D. farinae or 5 ng/ml SEB
or and 125 nM capsaicin. Cell supernatants were tested with a Substance P Elisa
kit (Enzo) following the manufacturer’s recommendations.
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8

Culturing Colorectal Cancer Cell Lines

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HT29 colorectal adenocarcinoma (HTB-38) cell line, HCT116 colorectal carcinoma (CCL-247) cell line, and SW480 (CCL-228) adenocarcinoma cell line were purchased from the American Type Culture Collection (ATCC, Virginia, USA). All cell lines were cultured in Dulbecco’s Modified Eagle’s medium (DMEM-Glutamax), supplemented with 10% of heat-inactivated fetal bovine serum (FBS; Sigma, St. Louis, Missouri, US), 100 units/100 μg of penicillin/streptomycin.
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9

Skeletal Muscle Cell Differentiation and WNT Signaling

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C25, 16U, 54-6 cells were cultured in Promocell skeletal muscle growth medium (Promocell, C-23060) supplemented with 15% foetal calf serum (FBS) and 1:1000 Gentamycin (Sigma). Differentiation was induced by switching the medium to DMEM GlutaMax, 0.5% FBS, 1:1000 bovine Insulin (Sigma) and 1:1000 Gentamycin. RH30 were cultured in DMEM GlutaMax (Gibco, 10566016) supplemented with 10% FBS and 1% Pen/Strep (Sigma). Cells were maintained in a humidified incubator at 37 °C and 5% CO2. Differentiation medium was used for RH30 cell culture under low serum conditions.
For WNT ligand stimulation experiments, cells were plated in 6 well plates and 24 h later were stimulated with 10 ng/µl WNT3a or WNT7a (final concentration) and protein harvested 24 h later.
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10

Transfection and Live-Cell Imaging of U-2 OS Cells

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U-2 OS cells (ATCC, HTB-96) were maintained in DMEM + GlutaMAX (Sigma-Aldrich, 61965-026) supplemented with 10% FBS at 37°C in 5% CO2. Two days before imaging, the cells were plated onto 4-chamber Glass Bottom Dish (Cellvis, D35C4-20-1.5-N) to achieve 30% confluency. On the following day, the cells were transfected with the mammalian expression vector pcDNA4.0/TO_EGFP-tau or pEGFP-C1_MAP4, or co-transfected with the pcDNA4.0/TO_EGFP-tau and pmScarlet-i alphaTubulin-C1 expression vectors using the HP-Xtreme transfection reagent (Sigma-Aldrich, 636624400). The pmScarlet-i_alphaTubulin_C1 was a gift from Dorus Gadella (Addgene plasmid #85047; http://n2t.net/addgene:85047; RRID:Addgene_85047). The cells were imaged 24h after transfection, with DMEM medium exchanged for FluoroBright DMEM medium (Sigma-Aldrich, A1896701).
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