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14 protocols using ab216462

1

Immunohistochemical Analysis of NGAL and 4-HNE

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Tissue sections were deparaffinized, rehydrated, and subjected to antigen retrieval, then stained with primary antibodies as flows: neutrophil gelatinase-associated lipocalin (NGAL, 1:200, Ab216462, Abcam, UK), 4-HNE (1:200, MAB3249-SP, NOVUS, USA), according to the IHC kit instructions (DAB-0031, KIT-9710, MXB, China). Samples were dehydrated, cleared, and sealed and representative images captured by microscopy (DP73, OLYMPUS, Japan; magnification, 400×). NGAL and 4-HNE IOD values were calculated as for Prussian blue staining.
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2

Histological Assessment of Liver Tissue in NAFLD

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Liver tissue was fixed in 4% paraformaldehyde, frozen in O.C.T, or snap-frozen in liquid nitrogen and stored at −80 °C. Paraformaldehyde-fixed paraffin-embedded sections of the liver were stained with hematoxylin-eosin for pathological analysis. Frozen sections in O.C.T were stained with Oil-Red-O to detect lipids. Images were captured by an optical microscope (Olympus BX51, China). The NAFLD activity score (NAS, 0-8 points) was assessed according to hepatic steatosis, lobular inflammation, and hepatocyte ballooning. A NAS <3 excludes NASH, NAS ≥5 can be used to diagnose NASH, and NAS between 3 and 5 indicates possible NASH. For immunohistochemistry, paraffin-embedded liver sections were stained with anti-CD68 antibody (ab125212, Abcam, USA), MPO antibody (gb11224, Servicebio, China), and Lipocalin-2 (LCN2) antibody (ab216462, Abcam, USA). Immunopositive cells were counted, and the number of positive cells in the liver sections was normalized to the tissue area.
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3

LCN2 Expression in Colitis and Cancer

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The mRNA expression levels of LCN2 in the normal, acute colitis, chronic colitis, and CAC mice were detected by RT-PCR. The LCN2 primer used for the amplification was as follows: 5′- CACCACGGACTACAACCA-3′ and 5′-ACACTCACCACCCATTCA-3′ (Sangon Biotech, China). Here, β-actin was regarded as the internal control. The reliability of the PCR results was verified in correspondence with the dissolution curve. The cycle threshold (Ct, which is the inflection point on the amplification power curve) was calculated, and the relative gene expression was calculated using the 2-ΔΔCt method [ΔCt = Ct (target gene) - Ct β-actin, ΔΔCt = ΔCt (target gene) - ΔCt (β-actin)]. Five samples of each group were randomly chosen for RT-PCR. The protein expression levels of LCN2 in the normal, acute colitis, chronic colitis, and CAC mice were detected by Western blot. The Anti-LCN2 antibody (ab216462, 1:1,000) and the Anti-GAPDH antibody (ab9485, 1:2,500) were purchased from Abcam. The target protein bands were developed by using enhanced chemiluminescence Western blotting detection reagent, and densities were quantified using Total Lab Quant V11.5 (Newcastle upon Tyne, UK). Three samples of each group were randomly chosen for Western blotting analysis.
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Western Blot Analysis of Hippocampus Proteins

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The homogenization of hippocampus tissues from mice (in triplicates from each group, different from those used in RNA-seq experiments) was carried out using a Dounce Tissue Homogenizer (BioVision, Milpitas, USA) with RIPA lysis buffer as per the manufacturer's protocol. The protein concentrations were quantified using Bradford protein assay reagent (Bio-Rad, Hercules, USA). The samples were resolved by 8–12 % SDS-PAGE and transferred to nitrocellulose membranes (Millipore, Bedford, USA). The primary antibodies (PSD-95: 1:2000, #3450, Cell Signaling Technology, Beverly, USA; Galr2: 1:2000, ab96702, Abcam, Cambridge, USA; Lcn2: 1:2000, ab216462, Abcam, Cambridge, USA; Hspa5: 1:2000, ab21685, Abcam, Cambridge, USA) were used to immunoblot aliquots of proteins at 4 °C overnight. The membranes were then incubated with secondary antibodies at room temperature for 1 h. Following immunoblotting, the membranes were developed using ECL (Enhanced Chemiluminescence) Plus reagents (Beyotime Biotechnology, Shanghai, China). Normalization of protein expression levels was performed relative to β-actin (AA128, Beyotime Biotechnology, Shanghai, China). The analysis of Western blot images was conducted using the Image J software (Bio-Rad, Hercules, USA).
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5

Western Blot Analysis of Protein Markers

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Western blot assay was performed as previously described [16 (link)]. Briefly, proteins isolated from the kidneys of mice were quantified using a BCA kit (Beyotime, Shanghai, China). The proteins were then separated by SDS/PAGE and transferred onto poly(vinylidene difluoride) membranes (Millipore, Billerica, MA, USA), which were subsequently incubated overnight at 4 °C with the primary antibodies (dilution 1 : 1000). Antibodies against NGAL (ab216462), PRMT1 (ab73246), GAPDH (ab9483), Smad3 (ab84177), p‐Smad3 (ab52903), E‐cadherin (E‐cad) (ab231303), pro caspase‐3 (ab32499), COX‐2 (ab179800), p‐STAT3 (ab76315), and STAT3 (ab68153) were purchased from Abcam (Cambridge, UK). Antibody against sIL‐6R (23457) was purchased from Proteintech (Rosemont, IL, USA). Antibody against cleaved caspase‐3 (SAB4503292) was purchased from Sigma‐Aldrich. The membranes were then incubated with the secondary antibody coupled with horseradish peroxidase at room temperature for 30 min. The bands of proteins were visualized via enhanced chemiluminescence substrate (Solarbio, Beijing, China). GAPDH served as an internal control.
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6

Immunohistochemical Analysis of Kidney Injury Markers

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The 4 μm-thick sections of rat kidney tissues were depara nized and rehydrated with xylene and deescalated ethanol. Antigen retrieval was conducted in sodium citrate buffer. To block endogenous peroxidase activity, the slices were incubated in 3% hydrogen peroxide in methanol for 20 min. After being washed with phosphate buffered saline (PBS), the sections were blocked in PBS containing 2% normal goat serum, 5% BSA, and 0.1% triton-X. The slices were then incubated with primary antibodies overnight at 4 ℃, followed by incubation with the secondary antibody (goat anti-rabbit, Abcam, UK) for 1 h at room temperature. DAB Kit was used to develop colors. The slices were counterstained with hematoxylin. The primary antibodies used in this study are listed below, including kidney injury molecule 1 (KIM-1) (NBP1-76701, 1:400, Novus), neutrophil gelatinase-associated lipocalin (NGAL) (ab216462, 1:1000, Abcam).
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7

Immunofluorescence Staining of Cells and Tissues

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Cells were fixed in 4% paraformaldehyde for 15 min after treatment and washed with PBS buffer twice for 5 min each. They were then blocked with 1% bovine serum albumin (BSA) solution at room temperature for 1 h and washed with PBS buffer twice for 5 min each. The cells were then incubated with each of the primary antibodies (anti-CD36, catalog #NB400-144, Novus, USA; anti-Aifm2, catalog #sc-377120, Santa Cruz, CA) overnight at 4 °C and washed. Next, the cells were incubated with a secondary antibody for 1 h, and the nuclei were subsequently counterstained with DAPI for 5 min. Finally, they were observed under a microscope equipped for epi-illumination with 5 × , 20 × , and 50 × objectives (Nikon Eclipse E800). The procedure for kidney tissue immunofluorescence staining was the same as that used for the IHC staining. The samples were incubated with primary antibodies (anti-NGAL, ab216462, Abcam; anti-Laminin, ab133645, Abcam) overnight at 4 °C and a secondary antibody for 1 h at 22 °C. The images were collected and analyzed with a UV microscope equipped with epi-illumination.
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8

Quantitative Immunohistochemistry of CD133 and NGAL

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A standard immunohistochemical technique was performed on renal paraffin sections using antibody against CD133 (ab19898, Abcam, Cambridge, MA, USA) or NGAL (ab216462, Abcam) at 1:100 dilution [24 (link)]. The expression level of CD133 was assessed by the percentage of positive cells in the field of vision. Specifically, the percentage of CD133 positive cells was the number of positive cells/the number of nuclei × 100%. The expression level of NGAL was assessed by the ratio between the NGAL positive area and the total tissue area. The above quantitative analysis was conducted by Image-Pro Plus 6.0.
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9

Lung Histology and LCN2 Immunostaining

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Mouse lungs were fixed in 4% formalin and embedded in paraffin. The lung sections were stained with hematoxylin and eosin. Immunohistochemical staining for LCN2 was performed using Dako EnVison+ System-HRP (DAB) (Dako, Tokyo, Japan) following the manufacturer’s instructions. Anti-LCN2 antibody (ab216462, Abcam, Cambridge, UK) was used as primary antibody.
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10

Immunohistochemical Analysis of Kidney Tissue

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The obtained kidney tissues were fixed in formalin. The fixed samples were embedded in paraffin and cut into 4‐µm‐thick sections, then deparaffinized, rehydrated, and blocked. Sections were first incubated with the primary antibodies rabbit anti‐mouse cleaved‐caspase3 (1:300, ab2302, Abcam) or rabbit anti‐mouse NGAL (1:200, ab216462, Abcam) at 4°C overnight. The sections were then washed three times with PBS and incubated with horseradish peroxidase (HRP)‐conjugated IgG for 30 min, and then incubated with 3,3'‐diaminobenzidine (DAB). Finally, the sections were counterstained with haematoxylin. The observation under the microscope was performed by two independent professional pathologists. The NGAL expression score was graded as follows: 0 (no staining), 1 (weak but detectable staining), 2 (distinct staining) and 3 (intense staining).
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