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Nanozoomer digital pathology virtual slide viewer software program

Manufactured by Hamamatsu Photonics
Sourced in Japan

The NanoZoomer Digital Pathology Virtual Slide Viewer software program is a digital slide viewing solution developed by Hamamatsu Photonics. The software enables the viewing and analysis of high-resolution digital images of pathological samples.

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5 protocols using nanozoomer digital pathology virtual slide viewer software program

1

In Situ Cell Death Detection

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The In Situ Cell Death Detection Kit, POD (Roche, 11684817910), was employed for this assay. Formalin-fixed and paraffin-embedded sections (thickness: 3-5 μm) were stained according to the manufacturer's instructions. After DAB imaging and hematoxylin counterstaining, the final staining images were captured and quantitatively analyzed using the NanoZoomer Digital Pathology Virtual Slide Viewer software program (Hamamatsu Photonics Corp., Hamamatsu, Japan).
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2

Immunohistochemical Analysis of Lung Tissue

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Harvested lungs were immersed in 4% paraformaldehyde for over 24 hours and then embedded in paraffin. Sections (thickness: 3-5 μm) were subjected to hematoxylin and eosin (H&E) and immunohistochemical (IHC) staining. For IHC staining, the procedure was as follows: (1) deparaffinization and rehydration; (2) 0.5% hydrogen peroxide blocking for 15 minutes at room temperature; (3) antigen retrieval: heat-mediated antigen retrieval (trypsin-mediated antigen retrieval was exclusively applied for PRDX4); (4) 3% bovine serum albumin blocking for 30 minutes at room temperature; (5) primary antibody incubation overnight at 4°C; (6) secondary antibody (Histofine Simple Stain MAX-PO424152) staining for 30 minutes at room temperature; and (7) 3,3′-diaminobenzidine (DAB) imaging and hematoxylin counterstaining. H&E and IHC staining images were captured and quantitatively analyzed using the NanoZoomer Digital Pathology Virtual Slide Viewer software program (Hamamatsu Photonics Corp., Hamamatsu, Japan).
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3

Histological Analysis of Mouse Jejunum

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After 24 h of fixation in 10% neutral-buffered formalin, we selected the same place of the mouse jejunum, embedded the specimen in paraffin, cut the specimen into sequential sections of 4 μm in thickness and performed hematoxylin and eosin (HE) staining. Images of the sections were captured with the Nano Zoomer Digital Pathology Virtual Slide Viewer software program (Hamamatsu Photonics Corp, Hamamatsu, Japan) and the villi lengths and gland depths were measured.
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4

Quantifying Liver Lipid Accumulation and Injury

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After fixation in 10% neutral-buffered formalin for 24 h, paraffin-embedded liver specimens were systematically cut into sequential 4-μm-thick sections. For histological analyses of the liver, images of hematoxylin and eosin (H&E), oil red-O, and immunohistochemistry.
IHC sections were captured and quantified using the NanoZoomer Digital Pathology Virtual Slide Viewer software program (Hamamatsu Photonics Corp, Hamamatsu, Japan). To evaluate the degree of lipid accumulation (steatosis score and lipid accumulation score for the liver), we performed oil red-O staining using frozen liver sections and categorized the tissues into 4 grades, as follows: no lipid droplets (score = 0); lipid droplets in <33% of hepatocytes (score = 1); lipid droplets 33%–66% of hepatocytes (score = 2) and lipid droplets in >66% of hepatocytes (score = 3). In addition, the degree of liver cell ballooning injury (ballooning score) was classified into three grades as follows: none (score = 0); few balloon cells (score = 1) or many balloon cells/prominent ballooning (score = 2).
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5

Histological Analysis of Mouse Liver

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After fixation in 10% neutral-buffered formalin over 24 h, the same liver lobe of all mice was selected, embedded in paraffin, cut into sequential sections of 3–5 μm in thickness and subjected to Hematoxylin-Eosin (HE) staining and immunohistochemistry (IHC). The frozen sections were cut into 5- to 8-μm sequential sections and subjected to Oil Red O staining (Oil Red O Stain Kit; Polysciences, Inc., Warrington, PA, USA). All section images were captured with the Nano Zoomer Digital Pathology Virtual Slide Viewer software program (Hamamatsu Photonics Corp, Hamamatsu, Japan). As described in a previous study [11 (link)], we used the NAFLD score (steatosis score and ballooning score) to assess the condition of the mouse liver (Table 1).
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