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6 protocols using ac devd cho

1

HUVEC Isolation and Culture Protocol

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Human umbilical vein endothelial cells (HUVECs) were purchased from Lonza (C2519A-lonza; Walkersville, MD, USA) and used in the experiments. The cells were grown in Dulbecco’s Modified Eagle’s Medium (DMEM) supplemented with 5% heat-inactivated fetal calf serum, 1% penicillin streptomycin, 4 mM L-glutamine, 4.5 g/L glucose, and 1.5 g/L sodium bicarbonate. Cells were kept in a humidified incubator with 5% CO2-95% air at 37°C, and the media were refreshed two to three times weekly. The cells were maintained in six-well culture plates, and the passages were performed by trypsinization. The experiments were performed when the plates became at least 80% confluent.
LPS, interleukin (IL) 1α, IL-1β, and media were purchased from Sigma-Aldrich (St. Louis, MO, USA). Anti-fractalkine (CX3CL1) antibody was purchased from Torrey Pines Biolabs (Secaucus, NJ, USA). Calpain inhibitor (BML-PI116-0005) and caspase-1 inhibitor (ZYVAD[OMe]-FMK) were purchased from Enzo Life Sciences (Farmingdale, NY, USA). Caspase-3 inhibitor (Ac-DEVD-CHO) and caspase-9 inhibitor (Z-LEHD-FMK) were purchased from BD Biosciences (San Jose, CA, USA).
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2

Caspase-3 Activity Assay Protocol

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Human Caspase 3 (HCASP3) (catalog # 1083-5) was purchased from
Biovision Inc. (Mountain View, CA). Fluorogenic substrate Ac-DEVD-AMC and
caspase-3 inhibitor Ac-DEVD-CHO were purchased from BD Pharmingen (San Diego,
CA). Costar 384-well, flat-bottom, black plates were from Corning Incorporated
(Corning, NY).
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3

Recombinant TRAIL and Caspase Inhibitors

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TRAIL was commercially supplied (Enzo Life Sciences, Farmingdale, NY, USA) or produced from 293T cells as described.45 (link) Briefly, the extracellular portion of human TRAIL (amino acids 95–281) was cloned into pBabe retroviral expression vectors to produce functionally active TRAIL,46 (link) which was quantified by TRAIL ELISA according to the manufacturer’s instructions (Abcam, Cambridge, UK). Caspase inhibitors (BD Pharmingen, San Diego, CA, USA) were as follows: Z-IETD-FMK (caspase-8 inhibitor), Z-VAD-FMK (general caspase inhibitor), Z-FA-FMK (negative control), Z-LEHD-FMK (caspase-9 inhibitor) and Ac-DEVD-CHO (caspase-3/7 inhibitor). Bcl-2, Bcl-xL inhibitors ABT-263 and ABT-737 were purchased from Cayman Chemicals (Ann Arbor, MI, USA)
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4

Anti-Fas-Induced Liver Apoptosis

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Ten-week-old mice on 100% NTBC or 14 days after NTBC withdrawal received an intraperitoneal injection with a monoclonal anti-Fas antibody (Jo2 purified anti-mouse CD95, 0.6 μg/g body weight diluted in 200 μL phosphate-buffered saline). Six hours after the injection, mice were killed and their livers were explanted. Caspase-3 activity was assayed using a synthetic tetrapeptide fluorogenic substrate (Ac-DEVD-AMC; BD Bioscience, San Jose, CA) in the presence or absence of the pan-caspase inhibitor (Ac-DEVD-CHO; BD Pharmingen), according to the manufacturer’s recommendations.
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5

Cytotoxicity Screening of PCB Congeners and Inhibitors

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Aroclor 1254 and individual congeners (PCB 77, PCB 126, PCB 153, PCB 180) were purchased from VWR International (Radnor, PA, USA). The purity of each PCB congener was higher than 99%, as assayed by gas-chromatography. Thyroid hormone receptor antagonist (1–850), α-Naphthoflavone (α-NF) (AhR inhibitor) and 7-Hydroxyflavone (HF) (CYP1A1 inhibitor) were purchased from Santa Cruz Biotechnology (Dallas, TX, USA). cis-diammineplatinum(II)dichloride (Cisplatin), Tumor Necrosis Factor-α (TNF-α), 3,3’,5 triiodothyronine (T3), 2,3,7,8-Tetrachlorodibenzo-p-dioxin (TCDD), Cycloheximide (CHX), Colchicine, Hydrogen Peroxide (H2O2) and Ascorbic Acid (vitamin C) were purchased from Sigma-Aldrich (St. Louis, MO, USA). Ac-DEVD-CHO (caspase-3 inhibitor) and Ac-IETD-CHO (caspase-8 inhibitor) were purchased from BD Biosciences (San Jose, CA, USA). Ac-LEHD-CHO caspase-9 inhibitor was purchased from Alexis Biochemicals (San Diego, CA, USA). Chemicals were dissolved in dimethyl sulfoxide (DMSO), which was used as a vehicle (0.1% final concentration), in the cellular apoptosis experiments.
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6

Caspase-3 Cleavage of Mouse Hippocampus

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Caspase-3 cleavage of mouse hippocampal homogenate was performed as previously described (Boston-Howes, 2006 (link)). Briefly, 1.25 μg of homogenate was suspended in 50 μl of caspase-3 cleavage buffer with 1 μl freshly prepared DTT (20 mM, final concentration) and 200 ng of recombinant active Caspase-3 (cat.# 556472, BD Pharminogen, San Jose, CA). Reactions were incubated for 6 hours and the reaction was stopped by the addition of sample buffer and 10 min of boiling. Caspase-3 inhibitor Ac-DEVD-CHO (0.2 μg/μl; BD Bioscience cat.#556485) was added to the reaction.
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