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9 protocols using fluorescein isothiocyanate (fitc)

1

Flow Cytometric Characterization of ucMSC

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Flow cytometric characterisation of control and treated ucMSC was performed by labelling with standard MSC markers, according to ISSCT criteria [41 (link)]: CD13 (PE-Cy7, BD Biosciences, San Jose, CA, USA), CD73 (PE, BD Pharmingen, San Diego, CA, USA), CD90 (APC, R&D Systems) and CD105 (FITC, R&D Systems), hematopoietic markers CD31 (PB, BD Biosciences), CD45 (APC-Cy, BD Biosciences) and the surface markers: HLA class I (Pacific Blue, Biolegend, San Diego, CA, USA), HLA class II (PERCP, BD Biosciences), CD362 (APC, R&D Systems), PD-L1 (PE, Biolegend), CD271 (PE-Cy7, BD Pharmingen), CD73 (PE, BD Pharmingen) and CD40 (PERCP, Biolegend).
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2

Hep3B Cell Apoptosis and Cell Cycle Analysis

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Hep3B cells were trypsinised (0.05% trypsin/0.53 mM EDTA), washed, and adjusted to 1 × 106 cells/ml (in saline containing 1% albumin; Biological Industries, Israel) for 10 min to determine their purity. The cells were fixed with 4% paraformaldehyde and permeabilised in 0.1% saponin in phosphate-buffered saline (PBS) for 20 min at room temperature. They were then stained with an anti-human HBsAg monoclonal antibody (R&D System) for 30 min at room temperature. The cells were then incubated with propidium iodide (PI) to stain fragmented DNA and Annexin V conjugated to fluorescein isothiocyanate (FITC) (R&D systems) to stain phosphatidylserine (PS) according to the manufacturer's instructions. The cells were analysed by flow cytometry (Becton-Dickinson LSR 11, Immunofluorometry Systems, Mountain View, CA, USA). Apoptotic cells were defined as Annexin V (+)/PI (-). Viable cells were defined as Annexin V (-)/PI (-). In each experimental setting, unstained controls, immunoglobulin G (IgG) isotype controls, and FMO controls were used [41 (link)].
To analyse the cell cycle, Hep3B was fixed in cold 70% ethanol for at least 30 min at 4°C. After washing two time in PBS, the cells were treated with 50 μl RNase (100 μg/ml), stained with 5 μl propidium iodide (PI) (50 μg PI/100 ml solution), and analysed with flow cytometry [41 (link)].
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3

Isolation and Phagocytosis of Peritoneal Immune Cells

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For isolation of peritoneal macrophages, mice were injected with 5 ml PBS. Macrophages were isolated from peritoneal lavage by plastic adherence. For isolation of granulocytes, mice were injected intraperitoneally with 1.5 ml sterile thioglycollate (3%). Elicited cells were harvested 4 h later by peritoneal lavage with 5 ml of cold PBS, and neutrophils were further purified from peritoneal lavage by magnetic cell sorting (Miltenyi Biotec). FITC-labeled E. coli were prepared by incubation with 0.5 mg/ml FITC (Sigma) for 20 min at 37 °C. Peritoneal macrophages (1 × 105 cells) or neutrophils (1 × 106 cells) were incubated with FITC-labeled bacteria at a multiplicity of infection of 100 for 30 min at 37 °C. After washing steps, cell nuclei were stained with DAPI (Invitrogen), followed by visualization using confocal laser scanning microscopy (LSM 510, Zeiss). The ratio of engulfed bacteria (as determined by overlay of green bacteria) was quantified by an independent researcher from 300 counted cells per well. In some experiments, peritoneal macrophages and neutrophils were pretreated with recombinant human IL-26 (100 ng/ml, R&D systems) before infection by FITC-labeled E. coli.
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4

Multiparametric Flow Cytometry of Lymphocyte Populations

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The following labelled murine anti-human monoclonal antibodies were used
to delineate lymphocyte populations by flow cytometry analysis: anti-CD3 (clone
UCHT1l) labeled with phycoerythrin-Texas Red-X (ECD) (Beckman Coulter, USA),
anti-CD4 (clone RPA-T4) labeled with V500 (BD Horizon, USA), anti-CD25 (clone
BC96) labeled with allophycocyanin with cyanin-7 (APCcy7) (Biolegend, USA),
anti-CD127 (clone A19D5) labeled with brilliant violet 421 (BV421) (Biolegend),
anti- FoxP3 (clone 236a) labeled with peridinin chlorophyll protein complex with
cyanin-5.5 (PerCP-Cy5.5) (BD Pharmigen), anti-CD39 (clone eBioA1) labeled with
phycoerythrin (PE) (eBioscience, USA), anti-CTLA-4 (clone L3D10) labeled with
allophycocyanin (APC) (Biolegend), anti-CD69 (clone FN50) labeled with
phycoerythrin-carbocyanin (PE-Cy7) (Biolegend), anti-HLA-DR (clone L243) labeled
with Alexa 700 (BD Pharmigen), anti-TNFRII (clone 22235) labeled with
fluorescein isothiocyanate (FITC) (R&D Systems, USA), anti-OX40 (clone
ACT35) labeled with PE-Cy7 (Biolegend), anti-GITR (110416) labeled with FITC
(R&D Systems), anti-CD45RO (clone UCHL1) labeled with APC (Biolegend),
and anti-CD45RA labeled with Alexa 700 (Biolegend). Antibody panels used in this
study are presented in Supplementary Table 1. We titrated each antibody and selected its
final dilution for an optimal specific staining associated with a low
background.
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5

Flow Cytometry Analysis of DC Differentiation

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DC differentiation was determined by flow cytometry analysis using fluorescent-labelled monoclonal antibodies to CD86 (IgG1), CD80 (IgG1), and CD83 (IgG1), all FITC labelled (R&D), and isotype controls for IgG1-FITC. Delta MFI was defined as the MFI ratio of specific markers and isotype controls. Apoptosis and necrosis control was performed using Annexin-V-FITC and Propidium Iodide Staining (PI), respectively, according to the manufacturer's instructions.
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6

Apoptosis Induction Assay with LY2624587

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Briefly, Namalwa or ARH-77 cells in growth medium containing 1% FBS were treated with different concentrations of LY2624587 for 48 hours, then stained with anti-annexin V antibody conjugated with FITC (R&D Systems). After a brief PBS wash, the cells were re-suspended in PBS buffer for flow cytometry analysis in Beckman Coulter FC 500 Cytomics flow cytometry.
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7

Multiparameter Flow Cytometry Phenotyping

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We pre-incubated 1 × 106–3 × 106 cells with APC-conjugated VY9, or NP8 tetramer at 37°C, 5% CO2 for one hour. (The tetramers were produced by the NIH Tetramer Core Facility at Emory University, Atlanta, GA.) Next, we added the antibodies recognizing the surface phenotypic markers. We used antibodies from BD Biosciences: CCR7 (clone 150503, R&D Systems) FITC, CD3 (clone SP34-2) PE-CF594, CD8 (clone RPA-T8) BV711, CD20 (clone 2H7) Alexa700, CD28 (clone CD28.2,) PE, CD45 (clone D058-1283) BV786; from BioLegend: PD-1 (clone EH12.2H7) BV605; from Beckman Coulter: NKG2a (clone Z199) PE-Cy7, and Near-Infrared Live/Dead Discriminator from Life Technologies. We incubated the cells for 15 min at room temperature, removed any unbound reagents with two washing steps then fixed them with 2% PFA. We acquired the data on a special-order BD LSR II (BD Biosciences, San Jose, CA) equipped with a 50 mW 405 nm violet, a 100 mW 488 nm blue, and a 50 mW 640 nm red laser, 16 detectors, and FACSDiva software version 8.0.1. We collected up to 250,000 events in the lymphocyte gate defined by the forward and side scatter parameters. We analyzed the data using FlowJo version 10.4.2.
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8

Macrophage Phagocytosis of FITC-labeled S. pneumoniae

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FITC-labeled S.pn was prepared by incubation with 0.5 mg/ml FITC (Sigma, Poole, United Kingdom) for 20 min at 37°C. Peritoneal macrophages (1 × 105 cells) and neutrophils (1 × 106 cells) from PGRN−/− and WT mice were pretreated with or without rmPGRN (100 ng/ml, R&D systems, Minneapolis, United States) for 2 h, and then infected with FITC-labeled S.pn (at multiplicity of infection, MOI, of 10). After washing steps, cell nuclei were stained with DAPI (Invitrogen, California, United States), followed by visualization using confocal laser scanning microscopy (LSM 510, Zeiss). The ratio of engulfed bacteria (as determined by overlay of green bacteria) was quantified by an independent researcher from 100 counted cells per well and was expressed as percentage of cells that contain bacteria.
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9

Multiparametric Flow Cytometry of T-cell Subsets

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We pre‐incubated 1 × 106–3 × 106 cells with APC‐conjugated VY9, or NP8 tetramer at 37°C, 5% CO2 for one hour. (The tetramers were produced by the NIH Tetramer Core Facility at Emory University, Atlanta, GA.) Next, we added the antibodies recognizing the surface phenotypic markers. We used antibodies from BD Biosciences: CCR7 (clone 150503, R&D Systems) FITC, CD3 (clone SP34‐2) PE‐CF594, CD8 (clone RPA‐T8) BV711, CD20 (clone 2H7) Alexa700, CD28 (clone CD28.2,) PE, CD45 (clone D058‐1283) BV786; from BioLegend: PD‐1 (clone EH12.2H7) BV605; from Beckman Coulter: NKG2a (clone Z199) PE‐Cy7, and Near‐Infrared Live/Dead Discriminator from Life Technologies. We incubated the cells for 15 min at room temperature, removed any unbound reagents with two washing steps then fixed them with 2% PFA. We acquired the data on a special‐order BD LSR II (BD Biosciences, San Jose, CA) equipped with a 50 mW 405 nm violet, a 100 mW 488 nm blue, and a 50 mW 640 nm red laser, 16 detectors, and FACSDiva software version 8.0.1. We collected up to 250,000 events in the lymphocyte gate defined by the forward and side scatter parameters. We analyzed the data using FlowJo version 10.4.2.
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