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11 protocols using cell culture dishes

1

Cell Culture and Differentiation of COS-7 and FBD-102b Cells

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African green monkey kidney epithelial cell-like COS-7 cells (Human Health Science Research Resource Bank, Osaka, Japan) were cultured on cell culture dishes (Greiner, Oberösterreich, Germany) in a culture medium consisting of Dulbecco’s Modified Eagle Medium (DMEM, Thermo Fisher Scientific) containing 10% heat-inactivated FBS and PenStrep reagent (Thermo Fisher Scientific) in 5% CO2 at 37 °C [12 (link),13 (link),14 (link),15 (link)].
Cells from the oligodendroglial FBD-102b cell line (a mouse brain neuronal stem cell line) were kindly provided by Dr. Y. Tomo-oka (Tokyo University of Science, Chiba, Japan). These FBD-102b cells were cultured on cell culture dishes in a culture medium consisting of DMEM/Nutrient Mixture F-12 containing 10% heat-inactivated FBS and PenStrep reagent in 5% CO2 at 37 °C [13 (link),14 (link),15 (link)]. To induce differentiation, FBD-102b cells were cultured for several days in the same culture medium without FBS on cell culture dishes (Greiner) with advanced TC polymer modification in 5% CO2 at 37 °C [13 (link),14 (link),15 (link)]. Cells with myelin-like wide membranes bearing multiple processes from the cell bodies, i.e., with cellular surface areas of 50-square-micrometers, were identified as differentiated [13 (link),14 (link),15 (link)].
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2

Glass Coverslip Cleaning and Passivation

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Thickness corrected glass coverslips (d=170±10 μm, Assistent, Karl Hecht KG, Sondheim, Germany) were cleaned by the following detergent treatment: ultrasonication in 2% Hellmanex solution (Hellma, Müllheim, Germany) for 10 min, flushing thoroughly with ultrapure water produced by a water purification system (Milli-Q Gradient A10, Millipore, San Francisco, CA) and again ultrasonication (2 × 10 min) in ultrapure water followed by repeated flushing with ultrapure water. To prevent unspecific interactions in GUV and RBC experiments, bare glass was passivated by incubation with 5 mg ml−1 bovine serum albumin (BSA, Sigma, Saint Louis, MO, USA) for 15 min. For macrophages, cell culture dishes (3-cm diameter, Greiner, Solingen, Germany) with thickness corrected glass coverslips were pre-coated with 10 μg ml−1 human fibronectin (BD Biosciences, Bedford, USA) in PBS for 30 min at 37 °C. In all cases, excess protein was removed by exchanging the buffer in a series of 10 washing steps.
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3

Evaluating Bioactive Compound Effects

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Dulbecco’s modified Eagles’ medium (DMEM) and fetal bovine serum (FBS) were purchased from Gibco (Grand Island, NY, USA). Cardamonin and cinnamaldehyde were obtained from the National Institutes for Food and Drug Control (Beijing, China). GSK1016790A, Ruthenium Red, Amiodarone, A-967079, and 2APB were purchased from Sigma-Aldrich (Saint Louis, MO, USA). Other chemicals were also obtained from Sigma-Aldrich if not stated otherwise. Cell culture dishes and 96-well microplates were acquired from Greiner (Frickenhausen, Germany).
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4

DPSC-laden Hydrogel Microwell Arrays

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DPSC-laden hydrogel microwell arrays were prepared following the method specified in Section 2.6. The DPSC laden hydrogel microstructures were placed in cell culture dishes (Greiner Bio-one, Frickenhausen, Germany) containing 12 mL of PBS solution immediately after fabrication to remove free radicals generated during the photo-polymerization process. HaCaT cells were then seeded in the DPSC-laden hydrogel microwell arrays following the method specified in Section 4.9. The hydrogels with encapsulated DPSCs were maintained in the culture media in a 95% air/5% CO2 humidified incubator at 37 °C and the media was changed every 3 days. Same location observations were conducted on days 0, 1, 3, 7, and 10, while cell viability assays were conducted in triplicate on day 10.
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5

Optimizing Cell Viability Assays

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DMF was obtained from Sigma Aldrich and solubilized in dimethyl sulfoxide (DMSO). Cell culture dishes were from Greiner Bio-One. DMEM cell culture medium, sterile phosphate buffers saline, penicillin, streptomycin, L-glutamic acid, L-glutamine 200 mM (100x), sodium pyruvate 10 mM, and Opti-Mem® (1x) were from Gibco Life Technologies. Cell Titer Blue was from Promega. Lipofectamine® RNAiMAX™ reagent was from Invitrogen by Life Technologies and (S)-4-carboxyphenylglycine from TOCRIS.
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6

Transfection of HEK293T Cells for Ion Channel Studies

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Cell culture dishes were purchased from Greiner Bio-One GmbH (Kremsmuenster, Austria). HEK293T cells were obtained from ATCC (Manassas, VA. Catalogue number: CRL-3216). Cells were seeded at a density of 20.000–100.000 cells per 35 mm dish 48h prior to transfection in 10% bovine serum in Dulbecco’s modified Eagle’s medium (DMEM). Cells were transfected using Lipofectamine2000 transfection reagent (Invitrogen, Carlsbad, CA, USA) and UltraMEM Reduced Serum Medium according to the manufacturer’s instructions. DMEM, UltraMEM and fetal bovine serum were purchased from Lonza (Basel, Switzerland). Cells were transfected with 1–2.5 μg DNA (depending on channel type) per 35 mm dish and used for experiments 24–48 hours after transfection. The plasmids encoding mouse TREK-1 and human Kv1.3 were cotransfected with a plasmid coding CD8. Transfected cells were identified using anti-CD8 Dynabeads (Thermo Fisher Scientific).
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7

Murine Oligodendroglial Precursor Cell Cultivation

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The murine oligodendroglial precursor cell line Oli-neu70 (link) was kindly provided by Professor Jacqueline Trotter (University of Mainz). Undifferentiated Oli-neu cells were incubated at 37 °C and 5% CO2 in poly-L-lysine (Merck) coated cell culture flasks (Greiner Bio one) for expansion or cell culture dishes (Greiner Bio one) for experiments. Sato medium consisting of DMEM high glucose medium (Fisher Scientific) with supplementation of 10 µg/ml transferrin (Sigma), 10 µg/ml insulin (Santa Cruz), 100 µM putrescine (Sigma), 200 nM progesterone (Sigma), 500 nM tri-iodo-thyrodine (Sigma), 220 nM sodium selenite (Sigma), 520 nM L-thyroxine (Sigma) and 1.5% normal horse serum (Fisher Scientific) was used for culturing and proliferation of cells. For each independent experiments, 2 × 105 cells from the same passage were seeded in a 60 mm Petri dish. 48 h later, the medium was changed to fresh, with or without (2S)-3-[[(1S)-1-(3,4-Dichlorophenyl)ethyl]amino-2-hydroxypropyl](phenylmethyl)phosphinic acid (CGP 55845, 50 µM, Tocris) for 24 h. Cells were lysed with Qiazol (Qiagen) for qRT-PCR in a blind manner. Conditional medium of control cells was collected for further neuronal treatment. In total, three independent experiments were performed.
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8

Mouse Oligodendrocyte Precursor Cell Culture

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The FBD-102b cell line (a mouse brain oligodendrocyte precursor cell line) was kindly provided by Dr. Y. Tomo-oka (Tokyo University of Science, Chiba, Japan; Riken, Saitama, Japan). FBD-102b cells on cell culture dishes (Greiner, Oberösterreich, Germany) or glass coverslips (Matsunami Glass, Osaka, Japan) were cultured in DMEM/F-12 (Nacalai Tesque, Kyoto, Japan) containing 10% heat-inactivated FBS (Thermo Fisher Scientific, Waltham, MA, USA) and PenStrep (Thermo Fisher Scientific) in the presence or absence of ibuprofen (300 micromolar, Nacalai Tesque) [25 (link),26 (link)]) in 5% CO2 at 37 °C.
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9

Human Fibroblast Growth Factor 7 Protocol

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All cell culture media, fetal calf serum (FCS), and supplements were obtained from Invitrogen. Cell culture dishes were purchased from Greiner Bio-One (Kremsmünster, Austria). Purified human FGF7 was provided by Ganymed Pharmaceuticals AG (Mainz, Germany). Unless otherwise mentioned, all other reagents were obtained from Sigma-Aldrich (Munich, Germany).
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10

Seeding Endothelial Cells on ECMO Oxygenator Membranes

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As previously described, we applied our well-established in vitro HFM endothelialization protocol, which was also optimized for our MOx, designed and constructed to simulate clinically applied ECMO oxygenators [29 (link)] (MHH Forschungswerkstatt, Hannover Medical School, Germany). To better understand MOx construction, a schematic exploded view (Figure 1E) and photography were included (Figure 1F). Summarizing, appropriately tailored FN-coated HFM patches were mounted in polycarbonate anchoring frames and introduced into 50 mL syringes (B. Braun, Melsungen, Germany) filled with 25 mL EC suspension containing 3 × 106 ECs. To ensure optimal cell distribution, HFMs were set under 1 rpm rotation around the axis in the longitudinal direction of the fibers for 4 h using a roller device (Greiner, Frickenhausen, Germany) [20 (link)]. Afterwards, HFMs were taken from the syringes and incubated under static culture conditions for an additional 48 h in cell culture dishes (Greiner Bio-One, Frickenhausen, Germany) filled with EGM-2. Thereafter, HFMs were ready for assembly into the MOx.
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